STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NAV_LOCUS7450Uncharacterized protein. (456 aa)    
Predicted Functional Partners:
NAV_LOCUS7339
RPOLD domain-containing protein.
    
 0.757
NAV_LOCUS1188
Uncharacterized protein.
    
 0.733
NAV_LOCUS1372
TFIIS-type domain-containing protein.
    
 0.730
NAV_LOCUS6513
SAP30_Sin3_bdg domain-containing protein.
    
 0.729
NAV_LOCUS2180
Uncharacterized protein.
     
 0.685
NAV_LOCUS8011
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.682
NAV_LOCUS5529
Uncharacterized protein.
     
 0.680
NAV_LOCUS2953
HORMA domain-containing protein.
    
 0.671
NAV_LOCUS2728
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.669
NAV_LOCUS4058
Uncharacterized protein.
    
 0.652
Your Current Organism:
Acanthocheilonema viteae
NCBI taxonomy Id: 6277
Other names: A. viteae, Dipetalonema viteae
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