NAV_LOCUS8347 protein (Acanthocheilonema viteae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NAV_LOCUS8347

Uncharacterized protein. (385 aa)

Predicted Functional Partners:

NAV_LOCUS1201

0.992

NAV_LOCUS8844

0.991

NAV_LOCUS1610

0.985

NAV_LOCUS4518

0.984

NAV_LOCUS4480

0.981

NAV_LOCUS134

0.980

NAV_LOCUS1788

0.979

NAV_LOCUS2713

0.979

NAV_LOCUS1746

0.978

NAV_LOCUS6370

0.977

Your Current Organism:

Acanthocheilonema viteae

NCBI taxonomy Id: 6277
Other names: A. viteae, Dipetalonema viteae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NAV_LOCUS1201	NAV_LOCUS134	A0A498RZN1	A0A498S1J5	Uncharacterized protein.	Uncharacterized protein.	0.998
NAV_LOCUS1201	NAV_LOCUS1610	A0A498RZN1	A0A498SA69	Uncharacterized protein.	TOG domain-containing protein.	0.995
NAV_LOCUS1201	NAV_LOCUS1746	A0A498RZN1	A0A498S5L0	Uncharacterized protein.	Uncharacterized protein.	0.980
NAV_LOCUS1201	NAV_LOCUS1788	A0A498RZN1	A0A498S148	Uncharacterized protein.	Uncharacterized protein.	0.998
NAV_LOCUS1201	NAV_LOCUS2713	A0A498RZN1	A0A498SH06	Uncharacterized protein.	Uncharacterized protein.	0.988
NAV_LOCUS1201	NAV_LOCUS4480	A0A498RZN1	A0A498SDH1	Uncharacterized protein.	Uncharacterized protein.	0.988
NAV_LOCUS1201	NAV_LOCUS4518	A0A498RZN1	A0A498S8C9	Uncharacterized protein.	PSP domain-containing protein.	0.996
NAV_LOCUS1201	NAV_LOCUS6370	A0A498RZN1	A0A498SRZ3	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.990
NAV_LOCUS1201	NAV_LOCUS8347	A0A498RZN1	A0A498SNR8	Uncharacterized protein.	Uncharacterized protein.	0.992
NAV_LOCUS1201	NAV_LOCUS8844	A0A498RZN1	A0A498SYT4	Uncharacterized protein.	Uncharacterized protein.	0.998
NAV_LOCUS134	NAV_LOCUS1201	A0A498S1J5	A0A498RZN1	Uncharacterized protein.	Uncharacterized protein.	0.998
NAV_LOCUS134	NAV_LOCUS1610	A0A498S1J5	A0A498SA69	Uncharacterized protein.	TOG domain-containing protein.	0.998
NAV_LOCUS134	NAV_LOCUS1746	A0A498S1J5	A0A498S5L0	Uncharacterized protein.	Uncharacterized protein.	0.987
NAV_LOCUS134	NAV_LOCUS1788	A0A498S1J5	A0A498S148	Uncharacterized protein.	Uncharacterized protein.	0.988
NAV_LOCUS134	NAV_LOCUS2713	A0A498S1J5	A0A498SH06	Uncharacterized protein.	Uncharacterized protein.	0.997
NAV_LOCUS134	NAV_LOCUS4480	A0A498S1J5	A0A498SDH1	Uncharacterized protein.	Uncharacterized protein.	0.993
NAV_LOCUS134	NAV_LOCUS4518	A0A498S1J5	A0A498S8C9	Uncharacterized protein.	PSP domain-containing protein.	0.988
NAV_LOCUS134	NAV_LOCUS6370	A0A498S1J5	A0A498SRZ3	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.996
NAV_LOCUS134	NAV_LOCUS8347	A0A498S1J5	A0A498SNR8	Uncharacterized protein.	Uncharacterized protein.	0.980
NAV_LOCUS134	NAV_LOCUS8844	A0A498S1J5	A0A498SYT4	Uncharacterized protein.	Uncharacterized protein.	0.988