NAV_LOCUS7969 protein (Acanthocheilonema viteae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NAV_LOCUS7969

Uncharacterized protein. (215 aa)

Predicted Functional Partners:

NAV_LOCUS6692

0.998

NAV_LOCUS3807

0.828

NAV_LOCUS5569

0.809

NAV_LOCUS5929

0.692

NAV_LOCUS519

0.671

NAV_LOCUS3106

0.664

NAV_LOCUS1300

0.609

NAV_LOCUS927

0.606

NAV_LOCUS2170

0.605

NAV_LOCUS100

0.597

Your Current Organism:

Acanthocheilonema viteae

NCBI taxonomy Id: 6277
Other names: A. viteae, Dipetalonema viteae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NAV_LOCUS100	NAV_LOCUS6692	A0A498S0T9	A0A498SJB2	Uncharacterized protein.	ATPase ASNA1 homolog; ATPase required for the post-translational delivery of tail- anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for ins [...]	0.493
NAV_LOCUS100	NAV_LOCUS7969	A0A498S0T9	A0A498SWH9	Uncharacterized protein.	Uncharacterized protein.	0.597
NAV_LOCUS1300	NAV_LOCUS3807	A0A498S9C9	A0A498SIR6	Uncharacterized protein.	Uncharacterized protein.	0.959
NAV_LOCUS1300	NAV_LOCUS5569	A0A498S9C9	A0A498SLJ0	Uncharacterized protein.	Uncharacterized protein.	0.975
NAV_LOCUS1300	NAV_LOCUS5929	A0A498S9C9	A0A498SMC1	Uncharacterized protein.	Plug_translocon domain-containing protein; Belongs to the membrane-bound acyltransferase family.	0.628
NAV_LOCUS1300	NAV_LOCUS6692	A0A498S9C9	A0A498SJB2	Uncharacterized protein.	ATPase ASNA1 homolog; ATPase required for the post-translational delivery of tail- anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for ins [...]	0.977
NAV_LOCUS1300	NAV_LOCUS7969	A0A498S9C9	A0A498SWH9	Uncharacterized protein.	Uncharacterized protein.	0.609
NAV_LOCUS2170	NAV_LOCUS5569	A0A498S6Q0	A0A498SLJ0	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.650
NAV_LOCUS2170	NAV_LOCUS7969	A0A498S6Q0	A0A498SWH9	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.605
NAV_LOCUS3106	NAV_LOCUS3807	A0A498SE44	A0A498SIR6	Uncharacterized protein.	Uncharacterized protein.	0.552
NAV_LOCUS3106	NAV_LOCUS5929	A0A498SE44	A0A498SMC1	Uncharacterized protein.	Plug_translocon domain-containing protein; Belongs to the membrane-bound acyltransferase family.	0.652
NAV_LOCUS3106	NAV_LOCUS6692	A0A498SE44	A0A498SJB2	Uncharacterized protein.	ATPase ASNA1 homolog; ATPase required for the post-translational delivery of tail- anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for ins [...]	0.725
NAV_LOCUS3106	NAV_LOCUS7969	A0A498SE44	A0A498SWH9	Uncharacterized protein.	Uncharacterized protein.	0.664
NAV_LOCUS3807	NAV_LOCUS1300	A0A498SIR6	A0A498S9C9	Uncharacterized protein.	Uncharacterized protein.	0.959
NAV_LOCUS3807	NAV_LOCUS3106	A0A498SIR6	A0A498SE44	Uncharacterized protein.	Uncharacterized protein.	0.552
NAV_LOCUS3807	NAV_LOCUS5569	A0A498SIR6	A0A498SLJ0	Uncharacterized protein.	Uncharacterized protein.	0.978
NAV_LOCUS3807	NAV_LOCUS5929	A0A498SIR6	A0A498SMC1	Uncharacterized protein.	Plug_translocon domain-containing protein; Belongs to the membrane-bound acyltransferase family.	0.503
NAV_LOCUS3807	NAV_LOCUS6692	A0A498SIR6	A0A498SJB2	Uncharacterized protein.	ATPase ASNA1 homolog; ATPase required for the post-translational delivery of tail- anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for ins [...]	0.997
NAV_LOCUS3807	NAV_LOCUS7969	A0A498SIR6	A0A498SWH9	Uncharacterized protein.	Uncharacterized protein.	0.828
NAV_LOCUS519	NAV_LOCUS5929	A0A498SAT9	A0A498SMC1	ER membrane protein complex subunit 3.	Plug_translocon domain-containing protein; Belongs to the membrane-bound acyltransferase family.	0.619