NAV_LOCUS8878 protein (Acanthocheilonema viteae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

NAV_LOCUS8878

Phosphorylase b kinase regulatory subunit; Phosphorylase b kinase catalyzes the phosphorylation of serine in certain substrates, including troponin I. (476 aa)

Predicted Functional Partners:

NAV_LOCUS9005

0.949

NAV_LOCUS4201

0.877

NAV_LOCUS2209

0.793

NAV_LOCUS2817

0.707

NAV_LOCUS8470

0.698

NAV_LOCUS7719

0.673

NAV_LOCUS1064

0.669

NAV_LOCUS4725

0.658

NAV_LOCUS292

0.636

NAV_LOCUS451

0.636

Your Current Organism:

Acanthocheilonema viteae

NCBI taxonomy Id: 6277
Other names: A. viteae, Dipetalonema viteae

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NAV_LOCUS1064	NAV_LOCUS2209	A0A498S349	A0A498SE72	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Uncharacterized protein; Belongs to the calmodulin family.	0.920
NAV_LOCUS1064	NAV_LOCUS2817	A0A498S349	A0A498S7S1	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Uncharacterized protein.	0.668
NAV_LOCUS1064	NAV_LOCUS292	A0A498S349	A0A498S478	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	EF-hand domain-containing protein.	0.668
NAV_LOCUS1064	NAV_LOCUS4201	A0A498S349	A0A498SBC0	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Protein kinase domain-containing protein.	0.886
NAV_LOCUS1064	NAV_LOCUS451	A0A498S349	A0A498S768	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Uncharacterized protein.	0.668
NAV_LOCUS1064	NAV_LOCUS4725	A0A498S349	A0A498SFZ0	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Phosphorylase b kinase regulatory subunit; Phosphorylase b kinase catalyzes the phosphorylation of serine in certain substrates, including troponin I.	0.669
NAV_LOCUS1064	NAV_LOCUS7719	A0A498S349	A0A498SS74	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Phosphorylase b kinase regulatory subunit; Phosphorylase b kinase catalyzes the phosphorylation of serine in certain substrates, including troponin I.	0.669
NAV_LOCUS1064	NAV_LOCUS8470	A0A498S349	A0A498SRC7	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Uncharacterized protein.	0.668
NAV_LOCUS1064	NAV_LOCUS8878	A0A498S349	A0A498SXL9	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Phosphorylase b kinase regulatory subunit; Phosphorylase b kinase catalyzes the phosphorylation of serine in certain substrates, including troponin I.	0.669
NAV_LOCUS1064	NAV_LOCUS9005	A0A498S349	A0A498SSX6	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	Phosphorylase b kinase regulatory subunit; Phosphorylase b kinase catalyzes the phosphorylation of serine in certain substrates, including troponin I.	0.669
NAV_LOCUS2209	NAV_LOCUS1064	A0A498SE72	A0A498S349	Uncharacterized protein; Belongs to the calmodulin family.	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.920
NAV_LOCUS2209	NAV_LOCUS4201	A0A498SE72	A0A498SBC0	Uncharacterized protein; Belongs to the calmodulin family.	Protein kinase domain-containing protein.	0.930
NAV_LOCUS2209	NAV_LOCUS4725	A0A498SE72	A0A498SFZ0	Uncharacterized protein; Belongs to the calmodulin family.	Phosphorylase b kinase regulatory subunit; Phosphorylase b kinase catalyzes the phosphorylation of serine in certain substrates, including troponin I.	0.793
NAV_LOCUS2209	NAV_LOCUS7719	A0A498SE72	A0A498SS74	Uncharacterized protein; Belongs to the calmodulin family.	Phosphorylase b kinase regulatory subunit; Phosphorylase b kinase catalyzes the phosphorylation of serine in certain substrates, including troponin I.	0.793
NAV_LOCUS2209	NAV_LOCUS8878	A0A498SE72	A0A498SXL9	Uncharacterized protein; Belongs to the calmodulin family.	Phosphorylase b kinase regulatory subunit; Phosphorylase b kinase catalyzes the phosphorylation of serine in certain substrates, including troponin I.	0.793
NAV_LOCUS2209	NAV_LOCUS9005	A0A498SE72	A0A498SSX6	Uncharacterized protein; Belongs to the calmodulin family.	Phosphorylase b kinase regulatory subunit; Phosphorylase b kinase catalyzes the phosphorylation of serine in certain substrates, including troponin I.	0.793
NAV_LOCUS2817	NAV_LOCUS1064	A0A498S7S1	A0A498S349	Uncharacterized protein.	Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.	0.668
NAV_LOCUS2817	NAV_LOCUS4201	A0A498S7S1	A0A498SBC0	Uncharacterized protein.	Protein kinase domain-containing protein.	0.873
NAV_LOCUS2817	NAV_LOCUS4725	A0A498S7S1	A0A498SFZ0	Uncharacterized protein.	Phosphorylase b kinase regulatory subunit; Phosphorylase b kinase catalyzes the phosphorylation of serine in certain substrates, including troponin I.	0.707
NAV_LOCUS2817	NAV_LOCUS7719	A0A498S7S1	A0A498SS74	Uncharacterized protein.	Phosphorylase b kinase regulatory subunit; Phosphorylase b kinase catalyzes the phosphorylation of serine in certain substrates, including troponin I.	0.707