STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NAV_LOCUS10376Uncharacterized protein. (152 aa)    
Predicted Functional Partners:
NAV_LOCUS8493
Uncharacterized protein.
    
 0.719
NAV_LOCUS7117
DIRP domain-containing protein.
    
 0.718
NAV_LOCUS6224
WD_REPEATS_REGION domain-containing protein.
    
 0.697
NAV_LOCUS4166
Uncharacterized protein.
    
 0.697
NAV_LOCUS6262
CRC domain-containing protein.
    
 0.689
NAV_LOCUS1867
ERCC4 domain-containing protein.
    
  0.640
NAV_LOCUS3085
Uncharacterized protein; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
    
  0.637
NAV_LOCUS3579
Uncharacterized protein.
    
 0.622
MED10
Mediator of RNA polymerase II transcription subunit 10; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
    
 0.622
NAV_LOCUS5719
Uncharacterized protein.
    
  0.613
Your Current Organism:
Acanthocheilonema viteae
NCBI taxonomy Id: 6277
Other names: A. viteae, Dipetalonema viteae
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