A0A5S6PCR4 protein (Brugia malayi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A5S6PCR4

Uncharacterized protein. (93 aa)

Predicted Functional Partners:

bma-xpb-1

0.972

Bm7120

0.970

bma-gtf-2h3

0.970

bma-gtf-2h2c

0.970

Bm1_16815

0.966

bma-cyh-1

0.965

Bm1_14135

0.951

bma-ama-1

0.948

bma-rpb-6

0.935

bma-tbp-1

0.928

Your Current Organism:

Brugia malayi

NCBI taxonomy Id: 6279
Other names: B. malayi, agent of lymphatic filariasis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A5S6PCR4	Bm1_14135	A0A5S6PCR4	A0A0K0IYV1	Uncharacterized protein.	Bm13749; Belongs to the protein kinase superfamily.	0.951
A0A5S6PCR4	Bm1_16815	A0A5S6PCR4	A0A5S6PLA6	Uncharacterized protein.	Uncharacterized protein.	0.966
A0A5S6PCR4	Bm7120	A0A5S6PCR4	A0A0H5SQX9	Uncharacterized protein.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.970
A0A5S6PCR4	bma-ama-1	A0A5S6PCR4	A0A0H5S9G0	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.948
A0A5S6PCR4	bma-cyh-1	A0A5S6PCR4	A0A0H5SDL0	Uncharacterized protein.	BMA-CYH-1.	0.965
A0A5S6PCR4	bma-gtf-2h2c	A0A5S6PCR4	A0A0K0IZU1	Uncharacterized protein.	General transcription factor IIH subunit.	0.970
A0A5S6PCR4	bma-gtf-2h3	A0A5S6PCR4	A0A0J9XZK0	Uncharacterized protein.	Bm7634, isoform b; Bm7634, isoform c.	0.970
A0A5S6PCR4	bma-rpb-6	A0A5S6PCR4	A0A0J9Y562	Uncharacterized protein.	BMA-RPB-6, isoform a; BMA-RPB-6, isoform b.	0.935
A0A5S6PCR4	bma-tbp-1	A0A5S6PCR4	A0A0J9XZL6	Uncharacterized protein.	BMA-TBP-1, isoform b.	0.928
A0A5S6PCR4	bma-xpb-1	A0A5S6PCR4	A0A0J9XW60	Uncharacterized protein.	Bm13812, isoform a; Bm13812, isoform b.	0.972
Bm1_14135	A0A5S6PCR4	A0A0K0IYV1	A0A5S6PCR4	Bm13749; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.951
Bm1_14135	Bm1_16815	A0A0K0IYV1	A0A5S6PLA6	Bm13749; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.991
Bm1_14135	Bm7120	A0A0K0IYV1	A0A0H5SQX9	Bm13749; Belongs to the protein kinase superfamily.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.980
Bm1_14135	bma-ama-1	A0A0K0IYV1	A0A0H5S9G0	Bm13749; Belongs to the protein kinase superfamily.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.996
Bm1_14135	bma-cyh-1	A0A0K0IYV1	A0A0H5SDL0	Bm13749; Belongs to the protein kinase superfamily.	BMA-CYH-1.	0.999
Bm1_14135	bma-gtf-2h2c	A0A0K0IYV1	A0A0K0IZU1	Bm13749; Belongs to the protein kinase superfamily.	General transcription factor IIH subunit.	0.992
Bm1_14135	bma-gtf-2h3	A0A0K0IYV1	A0A0J9XZK0	Bm13749; Belongs to the protein kinase superfamily.	Bm7634, isoform b; Bm7634, isoform c.	0.997
Bm1_14135	bma-rpb-6	A0A0K0IYV1	A0A0J9Y562	Bm13749; Belongs to the protein kinase superfamily.	BMA-RPB-6, isoform a; BMA-RPB-6, isoform b.	0.852
Bm1_14135	bma-tbp-1	A0A0K0IYV1	A0A0J9XZL6	Bm13749; Belongs to the protein kinase superfamily.	BMA-TBP-1, isoform b.	0.956
Bm1_14135	bma-xpb-1	A0A0K0IYV1	A0A0J9XW60	Bm13749; Belongs to the protein kinase superfamily.	Bm13812, isoform a; Bm13812, isoform b.	0.985