A0A044QSW9 protein (Onchocerca volvulus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A044QSW9

Uncharacterized protein. (454 aa)

Predicted Functional Partners:

A0A044TM97

0.995

A0A044SHS3

0.994

A0A2K6VXC1

0.989

A0A044U1H7

0.984

A0A044SK78

0.973

A0A044U9S3

0.969

A0A044U7R5

0.968

A0A044STW7

0.965

A0A044V1E3

0.965

A0A044V979

0.965

Your Current Organism:

Onchocerca volvulus

NCBI taxonomy Id: 6282
Other names: O. volvulus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A044QSW9	A0A044SHS3	Uncharacterized protein.	Uncharacterized protein.	0.994
A0A044QSW9	A0A044SK78	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.973
A0A044QSW9	A0A044STW7	Uncharacterized protein.	Uncharacterized protein.	0.965
A0A044QSW9	A0A044TM97	Uncharacterized protein.	CPSF_A domain-containing protein.	0.995
A0A044QSW9	A0A044U1H7	Uncharacterized protein.	RING-type domain-containing protein.	0.984
A0A044QSW9	A0A044U7R5	Uncharacterized protein.	Uncharacterized protein.	0.968
A0A044QSW9	A0A044U9S3	Uncharacterized protein.	TFIIS-type domain-containing protein; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.969
A0A044QSW9	A0A044V1E3	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.965
A0A044QSW9	A0A044V979	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.965
A0A044QSW9	A0A2K6VXC1	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.989
A0A044SHS3	A0A044QSW9	Uncharacterized protein.	Uncharacterized protein.	0.994
A0A044SHS3	A0A044SK78	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
A0A044SHS3	A0A044STW7	Uncharacterized protein.	Uncharacterized protein.	0.983
A0A044SHS3	A0A044TM97	Uncharacterized protein.	CPSF_A domain-containing protein.	0.988
A0A044SHS3	A0A044U1H7	Uncharacterized protein.	RING-type domain-containing protein.	0.915
A0A044SHS3	A0A044U7R5	Uncharacterized protein.	Uncharacterized protein.	0.938
A0A044SHS3	A0A044U9S3	Uncharacterized protein.	TFIIS-type domain-containing protein; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.995
A0A044SHS3	A0A044V1E3	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.994
A0A044SHS3	A0A044V979	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.983
A0A044SHS3	A0A2K6VXC1	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.942