A0A044SC46 protein (Onchocerca volvulus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A044SC46

SF4 helicase domain-containing protein. (785 aa)

Predicted Functional Partners:

A0A044VG49

0.837

A0A044RH56

0.641

A0A044UT20

0.641

A0A044V905

0.641

A0A158N816

0.641

A0A044VE71

0.639

A0A044RJI4

0.560

A0A044QL80

0.558

A0A044SV73

0.555

A0A044VBL5

0.554

Your Current Organism:

Onchocerca volvulus

NCBI taxonomy Id: 6282
Other names: O. volvulus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A044QL80	A0A044RJI4	Uncharacterized protein.	Mitochondrial genome maintenance exonuclease 1; Metal-dependent single-stranded DNA (ssDNA) exonuclease involved in mitochondrial genome maintenance; Belongs to the MGME1 family.	0.527
A0A044QL80	A0A044SC46	Uncharacterized protein.	SF4 helicase domain-containing protein.	0.558
A0A044QL80	A0A044VG49	Uncharacterized protein.	SURP motif domain-containing protein.	0.595
A0A044RH56	A0A044SC46	Helicase C-terminal domain-containing protein.	SF4 helicase domain-containing protein.	0.641
A0A044RJI4	A0A044QL80	Mitochondrial genome maintenance exonuclease 1; Metal-dependent single-stranded DNA (ssDNA) exonuclease involved in mitochondrial genome maintenance; Belongs to the MGME1 family.	Uncharacterized protein.	0.527
A0A044RJI4	A0A044SC46	Mitochondrial genome maintenance exonuclease 1; Metal-dependent single-stranded DNA (ssDNA) exonuclease involved in mitochondrial genome maintenance; Belongs to the MGME1 family.	SF4 helicase domain-containing protein.	0.560
A0A044RJI4	A0A044VE71	Mitochondrial genome maintenance exonuclease 1; Metal-dependent single-stranded DNA (ssDNA) exonuclease involved in mitochondrial genome maintenance; Belongs to the MGME1 family.	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	0.424
A0A044RJI4	A0A044VG49	Mitochondrial genome maintenance exonuclease 1; Metal-dependent single-stranded DNA (ssDNA) exonuclease involved in mitochondrial genome maintenance; Belongs to the MGME1 family.	SURP motif domain-containing protein.	0.479
A0A044SC46	A0A044QL80	SF4 helicase domain-containing protein.	Uncharacterized protein.	0.558
A0A044SC46	A0A044RH56	SF4 helicase domain-containing protein.	Helicase C-terminal domain-containing protein.	0.641
A0A044SC46	A0A044RJI4	SF4 helicase domain-containing protein.	Mitochondrial genome maintenance exonuclease 1; Metal-dependent single-stranded DNA (ssDNA) exonuclease involved in mitochondrial genome maintenance; Belongs to the MGME1 family.	0.560
A0A044SC46	A0A044SV73	SF4 helicase domain-containing protein.	Uncharacterized protein; Belongs to the peroxisomal membrane protein PXMP2/4 family.	0.555
A0A044SC46	A0A044UT20	SF4 helicase domain-containing protein.	Uncharacterized protein.	0.641
A0A044SC46	A0A044V905	SF4 helicase domain-containing protein.	Uncharacterized protein.	0.641
A0A044SC46	A0A044VBL5	SF4 helicase domain-containing protein.	DUF155 domain-containing protein.	0.554
A0A044SC46	A0A044VE71	SF4 helicase domain-containing protein.	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	0.639
A0A044SC46	A0A044VG49	SF4 helicase domain-containing protein.	SURP motif domain-containing protein.	0.837
A0A044SC46	A0A158N816	SF4 helicase domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.641
A0A044SV73	A0A044SC46	Uncharacterized protein; Belongs to the peroxisomal membrane protein PXMP2/4 family.	SF4 helicase domain-containing protein.	0.555
A0A044SV73	A0A044VG49	Uncharacterized protein; Belongs to the peroxisomal membrane protein PXMP2/4 family.	SURP motif domain-containing protein.	0.563