STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
azo0275Conserved hypothetical secreted protein. Homology to CC3220 of Caulobacter crescentus of 34% (trembl|Q9A3I4(SRS)) No domains predicted. Signal Peptide present. NO TMH present; Conserved hypothetical protein. (113 aa)    
Predicted Functional Partners:
sigW
Putative RNA polymerase sigma factor, Myxococcus xanthus carQ; Alcaligenes eutrophus plasmid pMOL28-encoded cnrH; Escherichia coli fecI; Pseudomonas syringae hrpL; rpoE from Escherichia coli, Salmonella typhimurium and Haemophilus influenzae; Streptomyces coelicolor sigE; and Bacillus subtilis sigma factors sigV, sigX, sigY and sigZ; High confidence in function and specificity; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.574
azo0272
Hypothetical protein. No homology to protein of similar size in the data bank. No domains predicted. No signal peptide. No TMHs.
       0.511
azo0274
Conserved hypothetical secreted protein. Homology to XCC0845 of X. campestris of 30% (trembl|Q8PC89). No domains predicted. Signal peptide. No TMHs; Conserved hypothetical protein.
       0.511
azo0276
Putative Hypothetical protein. No Good homologous hits in the DB. No domains/features/signal peptide or motifs present.
       0.497
hupB
DNA-binding protein HU (DNA-binding protein II); Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
    
   0.497
ihfB
Probable integration host factor, beta-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
    
   0.497
ihfA
Integration host factor alpha-subunit; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
    
   0.497
azo2152
Hypothetical secreted protein. Homology to GSU2347 of G. sulfurreducens of 26% (tremblnew|AAR35721(SRS)). Has PF04338;Protein of unknown function, DUF481; This family includes several proteins of uncharacterised function. Signal P reporting signal peptide present. NO TMH reported to be present.
  
     0.451
uxuA
Putative mannonate dehydratase; tremblnew|AAR36422:35% identity, 46% similarity EMBL:AE017218; AAR36422.1; TIGR:GSU3030; This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6. Interpro:IPR004628;Man_dehyd SignalP predicted signal peptide present. No. of transmembrane helices: 1 (TMHMM predicted) pyrC_dimer: dihydroorotase homodimeric; Specificity unclear.
  
     0.427
Your Current Organism:
Azoarcus sp. BH72
NCBI taxonomy Id: 62928
Other names: A. sp. BH72
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