azo0386 protein (Azoarcus sp. BH72) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

azo0386

Hypothetical membrane protein. No good homology to a protein of similar length in the data bank. no domains predicted no singal peptide 9 TMHs. (418 aa)

Predicted Functional Partners:

azo0385

0.776

azo0387

0.768

azo0384

0.636

azo0383

0.459

azo0254

0.422

azo1181

0.422

azo2324

0.422

azo3266

0.422

azo3277

0.422

dsbA

0.411

Your Current Organism:

Azoarcus sp. BH72

NCBI taxonomy Id: 62928
Other names: A. sp. BH72

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
azo0254	azo0386	azo0254	azo0386	Conserved polysaccharide deacetylase. Homology to rs03397 of R. solanacearum of 62% (trembl\|Q8Y2A8). Interpro: Polysaccharide deacetylase (IPR002509). Pfam: Polysaccharide deacetylase (PF01522). The family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase. It also includes chitin deacetylase from yeast, and endoxylanases which hydrolyses glucosidic bonds in xylan. No signal peptide. No TMHs; Conserved hypothetical protein.	Hypothetical membrane protein. No good homology to a protein of similar length in the data bank. no domains predicted no singal peptide 9 TMHs.	0.422
azo0383	azo0384	azo0383	azo0384	The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases,TREMBL:Q8Y2Q1 (42% identity); SWISSPROT:P25970 (34% identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase; Specificity unclear.	Hypothetical protein. No Good homologs in the DB matching the length of the protein. No Significant domains,features,motifs present.	0.548
azo0383	azo0385	azo0383	azo0385	The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases,TREMBL:Q8Y2Q1 (42% identity); SWISSPROT:P25970 (34% identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase; Specificity unclear.	Hypothetical membrane protein. Homology to vng2292h of Halobacterium sp. of 25% (trembl\|Q9HN16(SRS). no domains predicted .no signal peptide. 10 TMHs.	0.459
azo0383	azo0386	azo0383	azo0386	The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases,TREMBL:Q8Y2Q1 (42% identity); SWISSPROT:P25970 (34% identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase; Specificity unclear.	Hypothetical membrane protein. No good homology to a protein of similar length in the data bank. no domains predicted no singal peptide 9 TMHs.	0.459
azo0383	azo0387	azo0383	azo0387	The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases,TREMBL:Q8Y2Q1 (42% identity); SWISSPROT:P25970 (34% identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase; Specificity unclear.	Conserved hypothetical periplasmic binding proten. Homology to rs03250 of R. solanacearum of 53% (trembl\|Q8Y2Q2). Interpro: Periplasmic binding protein (IPR002491). Pfam: Periplasmic binding protein (PF01497). This family includes bacterial periplasmic binding proteins. Several of which are involved in iron transport. no signal peptide. no TMHs; Conserved hypothetical protein.	0.465
azo0383	dsbA	azo0383	azo0382	The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases,TREMBL:Q8Y2Q1 (42% identity); SWISSPROT:P25970 (34% identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase; Specificity unclear.	Putative protein disulfide-isomerase. Homology to dsbA of P. flourescens of 34%. Involved in disulfide-bond formation. Acts by transferring its disulfide bond to other proteins. Tigrfam: redox_disulf_1: redox-active disulfid Pfam: DSBA Oxidoreductase signal peptide no TMHS; Family membership.	0.700
azo0384	azo0383	azo0384	azo0383	Hypothetical protein. No Good homologs in the DB matching the length of the protein. No Significant domains,features,motifs present.	The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases,TREMBL:Q8Y2Q1 (42% identity); SWISSPROT:P25970 (34% identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase; Specificity unclear.	0.548
azo0384	azo0385	azo0384	azo0385	Hypothetical protein. No Good homologs in the DB matching the length of the protein. No Significant domains,features,motifs present.	Hypothetical membrane protein. Homology to vng2292h of Halobacterium sp. of 25% (trembl\|Q9HN16(SRS). no domains predicted .no signal peptide. 10 TMHs.	0.636
azo0384	azo0386	azo0384	azo0386	Hypothetical protein. No Good homologs in the DB matching the length of the protein. No Significant domains,features,motifs present.	Hypothetical membrane protein. No good homology to a protein of similar length in the data bank. no domains predicted no singal peptide 9 TMHs.	0.636
azo0384	azo0387	azo0384	azo0387	Hypothetical protein. No Good homologs in the DB matching the length of the protein. No Significant domains,features,motifs present.	Conserved hypothetical periplasmic binding proten. Homology to rs03250 of R. solanacearum of 53% (trembl\|Q8Y2Q2). Interpro: Periplasmic binding protein (IPR002491). Pfam: Periplasmic binding protein (PF01497). This family includes bacterial periplasmic binding proteins. Several of which are involved in iron transport. no signal peptide. no TMHs; Conserved hypothetical protein.	0.632
azo0384	dsbA	azo0384	azo0382	Hypothetical protein. No Good homologs in the DB matching the length of the protein. No Significant domains,features,motifs present.	Putative protein disulfide-isomerase. Homology to dsbA of P. flourescens of 34%. Involved in disulfide-bond formation. Acts by transferring its disulfide bond to other proteins. Tigrfam: redox_disulf_1: redox-active disulfid Pfam: DSBA Oxidoreductase signal peptide no TMHS; Family membership.	0.486
azo0385	azo0383	azo0385	azo0383	Hypothetical membrane protein. Homology to vng2292h of Halobacterium sp. of 25% (trembl\|Q9HN16(SRS). no domains predicted .no signal peptide. 10 TMHs.	The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases,TREMBL:Q8Y2Q1 (42% identity); SWISSPROT:P25970 (34% identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase; Specificity unclear.	0.459
azo0385	azo0384	azo0385	azo0384	Hypothetical membrane protein. Homology to vng2292h of Halobacterium sp. of 25% (trembl\|Q9HN16(SRS). no domains predicted .no signal peptide. 10 TMHs.	Hypothetical protein. No Good homologs in the DB matching the length of the protein. No Significant domains,features,motifs present.	0.636
azo0385	azo0386	azo0385	azo0386	Hypothetical membrane protein. Homology to vng2292h of Halobacterium sp. of 25% (trembl\|Q9HN16(SRS). no domains predicted .no signal peptide. 10 TMHs.	Hypothetical membrane protein. No good homology to a protein of similar length in the data bank. no domains predicted no singal peptide 9 TMHs.	0.776
azo0385	azo0387	azo0385	azo0387	Hypothetical membrane protein. Homology to vng2292h of Halobacterium sp. of 25% (trembl\|Q9HN16(SRS). no domains predicted .no signal peptide. 10 TMHs.	Conserved hypothetical periplasmic binding proten. Homology to rs03250 of R. solanacearum of 53% (trembl\|Q8Y2Q2). Interpro: Periplasmic binding protein (IPR002491). Pfam: Periplasmic binding protein (PF01497). This family includes bacterial periplasmic binding proteins. Several of which are involved in iron transport. no signal peptide. no TMHs; Conserved hypothetical protein.	0.768
azo0385	dsbA	azo0385	azo0382	Hypothetical membrane protein. Homology to vng2292h of Halobacterium sp. of 25% (trembl\|Q9HN16(SRS). no domains predicted .no signal peptide. 10 TMHs.	Putative protein disulfide-isomerase. Homology to dsbA of P. flourescens of 34%. Involved in disulfide-bond formation. Acts by transferring its disulfide bond to other proteins. Tigrfam: redox_disulf_1: redox-active disulfid Pfam: DSBA Oxidoreductase signal peptide no TMHS; Family membership.	0.418
azo0386	azo0254	azo0386	azo0254	Hypothetical membrane protein. No good homology to a protein of similar length in the data bank. no domains predicted no singal peptide 9 TMHs.	Conserved polysaccharide deacetylase. Homology to rs03397 of R. solanacearum of 62% (trembl\|Q8Y2A8). Interpro: Polysaccharide deacetylase (IPR002509). Pfam: Polysaccharide deacetylase (PF01522). The family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase. It also includes chitin deacetylase from yeast, and endoxylanases which hydrolyses glucosidic bonds in xylan. No signal peptide. No TMHs; Conserved hypothetical protein.	0.422
azo0386	azo0383	azo0386	azo0383	Hypothetical membrane protein. No good homology to a protein of similar length in the data bank. no domains predicted no singal peptide 9 TMHs.	The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases,TREMBL:Q8Y2Q1 (42% identity); SWISSPROT:P25970 (34% identity). InterPro (IPR002198): Short-chain dehydrogenase/reductase (SDR). InterPro (IPR002347): Glucose/ribitol dehydrogenase. Pfam (PF00106): Short chain dehydrogenase; Specificity unclear.	0.459
azo0386	azo0384	azo0386	azo0384	Hypothetical membrane protein. No good homology to a protein of similar length in the data bank. no domains predicted no singal peptide 9 TMHs.	Hypothetical protein. No Good homologs in the DB matching the length of the protein. No Significant domains,features,motifs present.	0.636
azo0386	azo0385	azo0386	azo0385	Hypothetical membrane protein. No good homology to a protein of similar length in the data bank. no domains predicted no singal peptide 9 TMHs.	Hypothetical membrane protein. Homology to vng2292h of Halobacterium sp. of 25% (trembl\|Q9HN16(SRS). no domains predicted .no signal peptide. 10 TMHs.	0.776