STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjdFHypothetical protein yjdF,44% identity (56% similarity) to TrEMBL;Q8XDT2. SwissProt;P39270. Signal P reporting Signal peptide present. TMHMM2 reporting 3 TMH's present. (203 aa)    
Predicted Functional Partners:
azo0531
Conserved hypothetical secreted protein. Homology to PA2778 of P.aeruginosa of 39% (trembl|Q9I065(SRS)) Has Signal Peptide. No TMH present. Has PF03412:Peptidase C39 family;Lantibiotic and non-lantibiotic bacteriocins are synthesised as precursor peptides containing N-terminal extensions (leader peptides) which are cleaved off during maturation. Most non-lantibiotics and also some lantibiotics have leader peptides of the so-called double-glycine type. These leader peptides share consensus sequences and also a common processing site with two conserved glycine residues in positions -1 an [...]
       0.773
azo0532
Hypothetical membrane protein. No homology of the entire protein with the data bank. No domains predicted. No signal peptide. 1 TMH.
       0.773
azo0534
Hypothetical membrane protein. TREMBL:Q83LX6: 27% identity, 42% similarity. similarity to E.coli ybeT. some,to yeast skt5 and s.pombe spac24b11.10c InterPro; IPR006597; Sel_like. InterPro; IPR001440; TPR. InterPro; IPR008941; TPR-like Pfam:DsbD:Cytochrome C biogenesis protein trans SMART:SM00671; SEL1 Signal peptide present (Signal P) transmembrane helices: 5 (TMHMM predicted); Function unclear.
       0.613
Your Current Organism:
Azoarcus sp. BH72
NCBI taxonomy Id: 62928
Other names: A. sp. BH72
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