STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspF1General secretion pathway protein F; Type II secretory pathway component F,; Specificity unclear. (401 aa)    
Predicted Functional Partners:
gspE1
Bacterial type II secretion system protein E,; Specificity unclear.
 
 
 0.986
azo3328
General secretion pathway protein E,; Specificity unclear.
 
 
 0.950
gspE2
General secretion pathway protein E (Type II traffic warden ATPase) INVOLVED IN A GENERAL SECRETION PATHWAY (GSP) FOR THE EXPORT OF PROTEINS. Similar to sprot|PILF_NEIGO (33%) and trembl|Q82U87 (54%). InterPro (PF00437): Bacterial type II secretion system protein E InterPro (PS50101): ATP/GTP-binding site motif A (P-loop); Specificity unclear.
 
 
 0.941
gspE3
General secretion pathway protein E,; Specificity unclear.
 
 
 0.941
pilB2
Pilus assembly protein PilB is a component of the pilus biogenesis apparatus,; High confidence in function and specificity.
 
 
 0.941
azo0797
Conserved hypothetical secreted protein. Homology to Daro03002886 of Dechloromonas aromatica of 31% (gi|53729825|ref|ZP_00150246.2|(NBCI ENTREZ)). No domains predicted. No TMHs. Signal peptide.
 
  
 0.916
pilD
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.866
gspD1
General secretion pathway protein D; Type II secretory pathway component D, weak similarity to SWISSPROT:HOFQ_ECOLI (18%). A number of proteins are involved in the general secretion pathway (GSP); one of these is known as protein D (GSPD protein). Protein D is involved in the type II general secretion pathway within Gram-negative bacteria, a signal sequence-dependent process responsible for protein export. InterPro (PF00263): General (type II) secretion pathway (GSP) D protein; Specificity unclear; Belongs to the bacterial secretin family.
 
  
 0.849
azo0796
Conserved hypothetical membrabe protein. Homology to Mflag03002444 of Methylobacillus flagellatus of 48% (gi|46120631|ref|ZP_00201765.1|(NBCI ENTREZ)). no domains predicted. No signal peptide. 1 TMHs.
 
  
 0.844
azo0801
Hypothetical membrane protein. No homology to the data bank. No domains predicted. Signal peptide present. 1 TMH present.
       0.838
Your Current Organism:
Azoarcus sp. BH72
NCBI taxonomy Id: 62928
Other names: A. sp. BH72
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