STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
azo0978Conserved hypothetical sodium:solute symporter. Homology to an orf of R. capsulata of 81% (trembl|O68042). Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The solutes transported may be sugars, amino acids, nucleosides,inositols, vitamins, urea or anions, depending on the system. Tigrfam: sss: SSS sodium solute [...] (572 aa)    
Predicted Functional Partners:
azo0977
Conserved hypothetical membrane protein. Homology to XCC4058 of Xanthomonas campestris of 55% (trembl|Q8P3L3) Has PF04341, Protein of unknown function,DUF485; IPR007436;This family includes several putative integral membrane proteins. no signal peptide 1 TMH; Conserved hypothetical protein.
 
  
 0.986
azo0681
Conserved hypothetical membrane protein. Homology to PP2796 of P. putida of 44% (trembl|Q88J53) PF04341,Protein of unknown function, DUF485;IPR007436;This family includes several putative integral membrane proteins. signal peptide 1 TMHs; Conserved hypothetical protein.
 
  
 0.921
azo2201
Putative nucleotidyltransferase,; Conserved hypothetical protein.
 
  
 0.672
basR
Probable two-component response regulatory protein,Response_reg. IPR001867; Trans_reg_C. Pfam: PF00072; response_reg. PF00486; trans_reg_C. SMART: SM00448; REC; Specificity unclear.
       0.463
basS
Putative two-component system histidine kinase,; Specificity unclear.
       0.461
azo2202
Probable DNA polymerase III, epsilon subunit,23% Identity to TrEMBL;Q8KDK8. Has EXOIII,SMART;SM00479;IPR006054, DnaQ;This family includes a variety of exonuclease proteins, such as ribonuclease T and the epsilon subunit of DNA polymerase III. Ribonuclease T is responsible for the end-turnover of tRNA,and removes the terminal AMP residue from uncharged tRNA. DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria, and also exhibits 3' to 5' exonuclease activity.
  
    0.444
Your Current Organism:
Azoarcus sp. BH72
NCBI taxonomy Id: 62928
Other names: A. sp. BH72
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