| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| azo0709 | azo1172 | azo0709 | azo1172 | Putative exoribonuclease II (EC: 3.1.13.1), RNase R. | Conserved hypothetical protein. Homology to the N-terminus of NE0717 of Nitrosomonas europaea of 56% (tremble:Q82WG3). Pfam: Cold shock protein domain RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor. No signal peptide. No TMHs. | 0.689 |
| azo0709 | azo1173 | azo0709 | azo1173 | Putative exoribonuclease II (EC: 3.1.13.1), RNase R. | Conserved hypothetical membrane protein. Homology to the C-terminus of ne0717 of N. europaea of 57% (trembl|Q82WG3). Pfam: Protein of unknown function (DUF1294). No signal peptide. 3 TMHs; Conserved hypothetical protein. | 0.689 |
| azo0709 | azo3791 | azo0709 | azo3791 | Putative exoribonuclease II (EC: 3.1.13.1), RNase R. | Conserved hypothetical ATPase. Homology to MCA0262 of Methylococcus capsulatus of 68% (gi|53756248|gb|AAU90539.1|(NBCI ENTREZ)). InterPro: AAA-protein (ATPases associated with various cellular activities) (IPR003959);AAA ATPase superfamily (IPR003593) Pfam: ATPase family associated with various cellular activities (domaine from 365 aa to 540 aa) no signal peptide. no TMHs; Function unclear. | 0.677 |
| azo0709 | azo3948 | azo0709 | azo3948 | Putative exoribonuclease II (EC: 3.1.13.1), RNase R. | Putative DNA-directed polymerase III; Excinuclease cho (EC 3.1.25.-) (Endonuclease cho) (UvrC homolog protein). Incises the DNA at the 3 side of a lesion during nucleotide excision repair. Incises the DNA farther away from the lesion than uvrC. Not able to incise the 5 site of a lesion. When a lesion remains because uvrC is not able to induce the 3 incision cho incises the DNA. Then uvrC makes the 5 incision. The combined action of cho and uvrC broadens the substrate range of nucleotide excision repair (By similarity); Specificity unclear. | 0.721 |
| azo0709 | hrpA | azo0709 | azo0716 | Putative exoribonuclease II (EC: 3.1.13.1), RNase R. | ATP-dependent helicase hrpA. Not yet known. InterPro: DEAD/DEAH box helicase; High confidence in function and specificity. | 0.643 |
| azo0709 | pnp | azo0709 | azo2103 | Putative exoribonuclease II (EC: 3.1.13.1), RNase R. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.819 |
| azo0709 | rph | azo0709 | azo3963 | Putative exoribonuclease II (EC: 3.1.13.1), RNase R. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.938 |
| azo0709 | rplW | azo0709 | azo3415 | Putative exoribonuclease II (EC: 3.1.13.1), RNase R. | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.680 |
| azo0709 | rpsQ | azo0709 | azo3408 | Putative exoribonuclease II (EC: 3.1.13.1), RNase R. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.772 |
| azo1172 | azo0709 | azo1172 | azo0709 | Conserved hypothetical protein. Homology to the N-terminus of NE0717 of Nitrosomonas europaea of 56% (tremble:Q82WG3). Pfam: Cold shock protein domain RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor. No signal peptide. No TMHs. | Putative exoribonuclease II (EC: 3.1.13.1), RNase R. | 0.689 |
| azo1172 | azo1173 | azo1172 | azo1173 | Conserved hypothetical protein. Homology to the N-terminus of NE0717 of Nitrosomonas europaea of 56% (tremble:Q82WG3). Pfam: Cold shock protein domain RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor. No signal peptide. No TMHs. | Conserved hypothetical membrane protein. Homology to the C-terminus of ne0717 of N. europaea of 57% (trembl|Q82WG3). Pfam: Protein of unknown function (DUF1294). No signal peptide. 3 TMHs; Conserved hypothetical protein. | 0.932 |
| azo1172 | azo3791 | azo1172 | azo3791 | Conserved hypothetical protein. Homology to the N-terminus of NE0717 of Nitrosomonas europaea of 56% (tremble:Q82WG3). Pfam: Cold shock protein domain RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor. No signal peptide. No TMHs. | Conserved hypothetical ATPase. Homology to MCA0262 of Methylococcus capsulatus of 68% (gi|53756248|gb|AAU90539.1|(NBCI ENTREZ)). InterPro: AAA-protein (ATPases associated with various cellular activities) (IPR003959);AAA ATPase superfamily (IPR003593) Pfam: ATPase family associated with various cellular activities (domaine from 365 aa to 540 aa) no signal peptide. no TMHs; Function unclear. | 0.693 |
| azo1172 | azo3948 | azo1172 | azo3948 | Conserved hypothetical protein. Homology to the N-terminus of NE0717 of Nitrosomonas europaea of 56% (tremble:Q82WG3). Pfam: Cold shock protein domain RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor. No signal peptide. No TMHs. | Putative DNA-directed polymerase III; Excinuclease cho (EC 3.1.25.-) (Endonuclease cho) (UvrC homolog protein). Incises the DNA at the 3 side of a lesion during nucleotide excision repair. Incises the DNA farther away from the lesion than uvrC. Not able to incise the 5 site of a lesion. When a lesion remains because uvrC is not able to induce the 3 incision cho incises the DNA. Then uvrC makes the 5 incision. The combined action of cho and uvrC broadens the substrate range of nucleotide excision repair (By similarity); Specificity unclear. | 0.689 |
| azo1172 | hrpA | azo1172 | azo0716 | Conserved hypothetical protein. Homology to the N-terminus of NE0717 of Nitrosomonas europaea of 56% (tremble:Q82WG3). Pfam: Cold shock protein domain RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor. No signal peptide. No TMHs. | ATP-dependent helicase hrpA. Not yet known. InterPro: DEAD/DEAH box helicase; High confidence in function and specificity. | 0.837 |
| azo1172 | pnp | azo1172 | azo2103 | Conserved hypothetical protein. Homology to the N-terminus of NE0717 of Nitrosomonas europaea of 56% (tremble:Q82WG3). Pfam: Cold shock protein domain RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor. No signal peptide. No TMHs. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.673 |
| azo1172 | rph | azo1172 | azo3963 | Conserved hypothetical protein. Homology to the N-terminus of NE0717 of Nitrosomonas europaea of 56% (tremble:Q82WG3). Pfam: Cold shock protein domain RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor. No signal peptide. No TMHs. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.682 |
| azo1172 | rplW | azo1172 | azo3415 | Conserved hypothetical protein. Homology to the N-terminus of NE0717 of Nitrosomonas europaea of 56% (tremble:Q82WG3). Pfam: Cold shock protein domain RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor. No signal peptide. No TMHs. | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.680 |
| azo1172 | rpsQ | azo1172 | azo3408 | Conserved hypothetical protein. Homology to the N-terminus of NE0717 of Nitrosomonas europaea of 56% (tremble:Q82WG3). Pfam: Cold shock protein domain RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor. No signal peptide. No TMHs. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.664 |
| azo1172 | vacB | azo1172 | azo0939 | Conserved hypothetical protein. Homology to the N-terminus of NE0717 of Nitrosomonas europaea of 56% (tremble:Q82WG3). Pfam: Cold shock protein domain RNA-binding domain that functions as a RNA-chaperone in bacteria and is involved in regulating translation in eukaryotes. Contains sub-family of RNA-binding domains in the Rho transcription termination factor. No signal peptide. No TMHs. | Exoribonuclease II; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.704 |
| azo1173 | azo0709 | azo1173 | azo0709 | Conserved hypothetical membrane protein. Homology to the C-terminus of ne0717 of N. europaea of 57% (trembl|Q82WG3). Pfam: Protein of unknown function (DUF1294). No signal peptide. 3 TMHs; Conserved hypothetical protein. | Putative exoribonuclease II (EC: 3.1.13.1), RNase R. | 0.689 |
