STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
azo1297Conserved hypothetical protein. Homology to CV3985 of C.violaceum of 42% (tremble:Q7NR00). Has PF07025:(IPR010745)Protein of unknown function (DUF1316);This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown. No signal peptide or TMH present. (147 aa)    
Predicted Functional Partners:
azo1298
Conserved hypothetical membrane protein. Homology to cv3984 of C. violaceum of 47% (trembl|Q7NR01(SRS)) no domains predicted no signal peptide 1 TMH; Conserved hypothetical protein.
 
  
 0.966
azo1300
Hypothetical protein,34% identity (52% similarity) to TrEMBL;Q7NR03. No domains, repeats, motifs or features were predicted with confidence; Function unclear.
 
  
 0.957
azo1299
Hypothetical protein,50% identity (67% similarity)to TrEMBL;Q7NR02. TrEMBL;Q88IA6(39%),Q8XRU1(37%). Has PF05936(IPR010263):Bacterial protein of unknown function (DUF876);This family consists of a series of hypothetical bacterial sequences of unknown function. No Signal Peptide or TMH reported present; Function unclear.
 
  
 0.956
azo1303
Hypothetical protein,50% identity (66% Similarity) to TrEMBL;Q8XRT8. TrEMBL;Q7NR06(60% identity,74% similarity). Has PF05591;Protein of unknown function (DUF770)(IPR008312)This family consists of several proteins of unknown function from various bacterial species. No Signal peptide or TMH present; Function unclear.
 
  
 0.921
azo1309
Conserved hypothetical protein. Homology to CV3967 of C.violaceum of 45% (tremble:Q7NR18) Has (IPR010732)PF06996:Protein of unknown function (DUF1305);This family consists of several hypothetical bacterial proteins of around 300 residues in length. The function of this family is unknown although one member (Q93IT4) from Salmonella enterica is thought to be involved in virulence. No signal peptide or TMH reported present.
 
  
 0.906
azo1304
Hypothetical protein,63% identity (81% similarity) to TrEMBL;Q8XRT7. TrEMBL;Q7NR07(73% identity,86% similarity). Has (IPR010269)PF05943:Protein of unknown function (DUF877);This family consists of a number of uncharacterised bacterial proteins. The function of this family is unknown. No Signal peptide or TMH present; Function unclear.
 
  
 0.905
azo1308
Conserved hypothetical protein. Homology to CV3969 of C.violaceum of 56% (tremble: Q7NR16). Has (IPR010272)PF05947:Bacterial protein of unknown function (DUF879);This family consists of several hypothetical bacterial proteins of unknown function. No signal peptide or TMH present.
 
  
 0.903
azo1302
Conserved hypothetical membrane protein. Homology to CV3712 of Chromobacterium violaceum of 35% (trembl|Q7NR05) Signal P reporting Signal Peptide Present. TMHMM2 reporting 2 TMH's present. Has PF06761:(IPR009612)ImcF-related;This family represents a conserved region within several bacterial proteins that resemble ImcF, which has been proposed [1] to be involved in Vibrio cholerae cell surface reorganisation, resulting in increased adherence to epithelial cells and increased conjugation frequency. Note that many family members are hypothetical proteins. Has PF06744,(IPR010623)Protein of [...]
 
  
 0.898
azo1307
Probable vgr-related protein,41% identity (55% similarity) to TrEMBL;Q7NY43. TrEMBL;Q8XSF8 Has (IPR006533 Rhs_Vgr)PF04524:Protein of unknown function, DUF586;This family contains a conserved region in several bacterial proteins of unknown function. Coils2 program predicts presence of a coiled coil.
 
  
 0.887
azo1301
Hypothetical membrane protein. No homology of the entire protein with the data bank. Pfam: D-alanyl-D-alanine carboxypeptidase (101-209 aa) no signal peptide 1 TMHs.
 
     0.876
Your Current Organism:
Azoarcus sp. BH72
NCBI taxonomy Id: 62928
Other names: A. sp. BH72
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