STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
azo1428Conserved hypothetical flavoprotein. Homology to rsc2212 of P. solanacearum of 59% (trembl|Q8XXA4). Pfam: Methallo-beta-lactamase no signal peptide no TMHs; Conserved hypothetical protein. (256 aa)    
Predicted Functional Partners:
hemN
Oxygen-independent coproporphyrinogen III oxidase. ANAEROBIC TRANSFORMATION OF COPROPORPHYRINOGEN-III INTO PROTOPORPHYRINOGEN-IX. hemN: oxygen-independent coproporphyrinogen III oxidase; High confidence in function and specificity.
   
  
 0.649
rubA
Probable rubredoxin. Homology to ruba of A. calcoaceticus of 42% (sprot|RUBR_ACIAD). Involved in the hydrocarbon hydroxylating system to convert dodecane to lauric acid, which transfers electrons from NADH to rubredoxin reductase and then through rubredoxin to alkane 1 monooxygenase. Pfam: Rubredoxin no singal peptide no TMHs; Family membership.
  
  
 0.555
ompW
Outer membrane protein W precursor. Acts as a receptor for colicin S4; High confidence in function and specificity.
   
    0.532
dcrH3
Putative hemerythrin-like protein; DcrH:hemerythrin protein, is transmembrane methyl-accepting protein probably involved in bacterial chemotaxis. 32% Hemerythrin. Pfam:PF01814; Hemerythrin; 1; High confidence in function and specificity.
  
    0.518
azo3759
Hemerythrin family protein, 38% Identity to TrEMBl:Q74G47,35% to TrEMBL; Q73NY7. Has PF01814,Hemerythrin HHE cation binding domain; IPR002063 Hemerythrin; Iteration of the HHE family found it to be related to Hemerythrin. It also demonstrated that what has been described as a single domain in fact consists of two cation binding domains. Members of this family occur all across nature and are involved in a variety of processes. For instance, in Nereis diversicolor P80255 binds Cadmium so as to protect the organism from toxicity ([3]). However Hemerythrin is classically described as Oxyge [...]
  
    0.518
dcrH1
Putative hemerythrin-like protein; DcrH: hemerythrin protein,is a transmembrane methyl-accepting protein probably involved in bacterial chemotaxis. 36% Hemerythrin. Hemerythrin family non-heme Pfam:PF01814; Hemerythrin; 1; High confidence in function and specificity.
 
    0.496
mexR
Putative MarR-family transcriptional regulator,; Family membership.
       0.434
azo2350
Conserved hypothetical protein. Homology to orf of Desulfovibrio vulgaris of 41% (tremblnew|AAS97780(SRS)). No domain predicted. No TMHs. No signal peptide.
   
    0.408
Your Current Organism:
Azoarcus sp. BH72
NCBI taxonomy Id: 62928
Other names: A. sp. BH72
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