STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
azo1618Conserved hypothetical protein. Homology to bpp3312 of B. parapertussis (trembl|Q7WD15). TIGR00096: conserved hypothetical protein Pfam: Tetrapyrrole (Corrin/Porphyrin) Methyltransferase no signal peptide no TMHs. (241 aa)    
Predicted Functional Partners:
yceF
Maf-like protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes 7- methyl-GTP (m(7)GTP). May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids; Belongs to the Maf family. YceF subfamily.
  
    0.863
azo1620
Conserved hypothetical protein. Homology to CV3419 of Chromobacterium violaceum of 42% (trembl:Q7NSK4). Has PF02620, Uncharacterized ACR,IPR003772;This entry describes proteins of unknown function. No signal peptide. No TMHs.
       0.576
rpmF
50S ribosomal protein L32; Family membership; Belongs to the bacterial ribosomal protein bL32 family.
     
 0.565
azo3434
Conserved hypothetical membrane protein. Similar to TREMBL:Q82Y44 (38% identity); TREMBL:Q7NWG1 (37% identity). TMHMM reporting four transmembrane helices. signal peptide; Conserved hypothetical protein.
 
  
 0.530
azo0709
Putative exoribonuclease II (EC: 3.1.13.1), RNase R.
 
   
 0.505
metG
MetG protein; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
  
  
 0.496
murB
UDP-N-acetylmuramate dehydrogenase; Cell wall formation.
 
     0.476
azo2036
Conserved hypothetical protein.
  
  
 0.469
fabD
Probable malonyl CoA-acyl carrier protein transacylase. Homology to fabD of E. coli of 54% (sprot|FABD_ECOLI). Is involved in fatty acid biosynthesis and transfers the malonyl moeity from coenzyme A to acyl-carrier protein. InterPro: Acyl transferase domain (IPR001227); Manyl CoA-acyl carrier protein transaylase (IPR004410) Pfam: Acyl transferase domain Tigrfam: fabD: malonyl CoA-acyl carrier protein no signal peptide no TMHs; High confidence in function and specificity.
   
   0.422
prmA
Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.
 
  
 0.404
Your Current Organism:
Azoarcus sp. BH72
NCBI taxonomy Id: 62928
Other names: A. sp. BH72
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