Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| azo1620 | infC | azo1620 | azo1080 | Conserved hypothetical protein. Homology to CV3419 of Chromobacterium violaceum of 42% (trembl:Q7NSK4). Has PF02620, Uncharacterized ACR,IPR003772;This entry describes proteins of unknown function. No signal peptide. No TMHs. | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 0.866 |
| azo1620 | rplA | azo1620 | azo3427 | Conserved hypothetical protein. Homology to CV3419 of Chromobacterium violaceum of 42% (trembl:Q7NSK4). Has PF02620, Uncharacterized ACR,IPR003772;This entry describes proteins of unknown function. No signal peptide. No TMHs. | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.868 |
| azo1620 | rplD | azo1620 | azo3416 | Conserved hypothetical protein. Homology to CV3419 of Chromobacterium violaceum of 42% (trembl:Q7NSK4). Has PF02620, Uncharacterized ACR,IPR003772;This entry describes proteins of unknown function. No signal peptide. No TMHs. | 50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.890 |
| azo1620 | rplK | azo1620 | azo3428 | Conserved hypothetical protein. Homology to CV3419 of Chromobacterium violaceum of 42% (trembl:Q7NSK4). Has PF02620, Uncharacterized ACR,IPR003772;This entry describes proteins of unknown function. No signal peptide. No TMHs. | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.874 |
| azo1620 | rpmF | azo1620 | azo1621 | Conserved hypothetical protein. Homology to CV3419 of Chromobacterium violaceum of 42% (trembl:Q7NSK4). Has PF02620, Uncharacterized ACR,IPR003772;This entry describes proteins of unknown function. No signal peptide. No TMHs. | 50S ribosomal protein L32; Family membership; Belongs to the bacterial ribosomal protein bL32 family. | 0.967 |
| azo1620 | rpsB | azo1620 | azo1909 | Conserved hypothetical protein. Homology to CV3419 of Chromobacterium violaceum of 42% (trembl:Q7NSK4). Has PF02620, Uncharacterized ACR,IPR003772;This entry describes proteins of unknown function. No signal peptide. No TMHs. | 30S ribosomal protein S2. InterPro: Ribosomal protein S2; High confidence in function and specificity; Belongs to the universal ribosomal protein uS2 family. | 0.867 |
| azo1620 | rpsC | azo1620 | azo3411 | Conserved hypothetical protein. Homology to CV3419 of Chromobacterium violaceum of 42% (trembl:Q7NSK4). Has PF02620, Uncharacterized ACR,IPR003772;This entry describes proteins of unknown function. No signal peptide. No TMHs. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.972 |
| azo1620 | rpsF | azo1620 | azo0718 | Conserved hypothetical protein. Homology to CV3419 of Chromobacterium violaceum of 42% (trembl:Q7NSK4). Has PF02620, Uncharacterized ACR,IPR003772;This entry describes proteins of unknown function. No signal peptide. No TMHs. | RpsF protein; Binds together with S18 to 16S ribosomal RNA. | 0.869 |
| azo1620 | rpsP | azo1620 | azo2898 | Conserved hypothetical protein. Homology to CV3419 of Chromobacterium violaceum of 42% (trembl:Q7NSK4). Has PF02620, Uncharacterized ACR,IPR003772;This entry describes proteins of unknown function. No signal peptide. No TMHs. | 30S ribosomal protein S16; High confidence in function and specificity; Belongs to the bacterial ribosomal protein bS16 family. | 0.869 |
| azo1620 | trmD | azo1620 | azo2900 | Conserved hypothetical protein. Homology to CV3419 of Chromobacterium violaceum of 42% (trembl:Q7NSK4). Has PF02620, Uncharacterized ACR,IPR003772;This entry describes proteins of unknown function. No signal peptide. No TMHs. | tRNA (guanine-N1-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.864 |
| infC | azo1620 | azo1080 | azo1620 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | Conserved hypothetical protein. Homology to CV3419 of Chromobacterium violaceum of 42% (trembl:Q7NSK4). Has PF02620, Uncharacterized ACR,IPR003772;This entry describes proteins of unknown function. No signal peptide. No TMHs. | 0.866 |
| infC | rplA | azo1080 | azo3427 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.933 |
| infC | rplD | azo1080 | azo3416 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome. | 0.914 |
| infC | rplK | azo1080 | azo3428 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. | 0.918 |
| infC | rpmF | azo1080 | azo1621 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 50S ribosomal protein L32; Family membership; Belongs to the bacterial ribosomal protein bL32 family. | 0.909 |
| infC | rpsB | azo1080 | azo1909 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 30S ribosomal protein S2. InterPro: Ribosomal protein S2; High confidence in function and specificity; Belongs to the universal ribosomal protein uS2 family. | 0.985 |
| infC | rpsC | azo1080 | azo3411 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.984 |
| infC | rpsF | azo1080 | azo0718 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | RpsF protein; Binds together with S18 to 16S ribosomal RNA. | 0.981 |
| infC | rpsP | azo1080 | azo2898 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | 30S ribosomal protein S16; High confidence in function and specificity; Belongs to the bacterial ribosomal protein bS16 family. | 0.973 |
| infC | trmD | azo1080 | azo2900 | Translation initiation factor IF-3; IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. | tRNA (guanine-N1-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.527 |
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