Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
azo1811Conserved hypothetical membrane protein. Homology to BPP2658 of B. parapertussis of 48% (trembl|Q7W772(SRS)). 3 TMHs. no signal protein. Has PF04239;Protein of unknown function (DUF421);IPR007353 DUF421; Conserved hypothetical protein. (178 aa)    
Predicted Functional Partners:
azo1773
Conserved hypothetical protein. Homology to an orf of P. putida of 58% (trembl|O68643). no TMHs. no signal peptide. No domains predicted.
  
     0.529
azo1732
The short-chain dehydrogenases/reductases family (SDR) is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases,; Family membership.
  
     0.520
azo1812
Probable transcriptional regulatory protein,; Specificity unclear.
       0.512
azo3242
Conserved hypothetical protein. Homology to XCC2280 of X.campestris of 33% (trembl:Q8P8G2). No domains predicted. No signal Peptide present. No TMH present.
   
    0.464
azo0334
Conserved hypothetical secreted protein. Homology to BPP2140 of Bordetella parapertussis 0f 44% (trembl|Q7W8J3(SRS)) No domains predicted. Signal peptide present. No TMH present. 6PTHBS: 6-pyruvoyl tetrahydrobiopterin; Conserved hypothetical protein.
  
     0.433
Your Current Organism:
Azoarcus sp. BH72
NCBI taxonomy Id: 62928
Other names: A. sp. BH72
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