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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
azo1952Conserved hypothetical secreted protein. Homology to Daro03003313 of Dechloromonas aromatica of 60% (gi|53729649|ref|ZP_00149978.2|(NBCI ENTREZ)). Has PF06980, Protein of unknown function (DUF1302);IPR010727,DUF1302;This family contains a number of hypothetical bacterial proteins of unknown function that are approximately 600 residues long. Most family members seem to be from Pseudomonas. Signal peptide present. No TMHs; Conserved hypothetical protein. (532 aa)    
Predicted Functional Partners:
azo1953
Conserved hypothetical secreted protein. Homology to Raeut03000741 of Ralstonia eutropha of 45% (gi|46131405|ref|ZP_00169583.2|(NBCI ENTREZ)). Pfam: Protein of unknown function (DUF1329). This family consists of several hypothetical bacterial proteins of around 475 residues in length. The majority of family members are from Pseudomonas species but the family also contains sequences from Shewanella oneidensis and Thauera aromatica. No TMHs. Signal peptide present; Conserved hypothetical protein.
 
     0.943
azo1951
Putative exporter of RND superfamily; Probable Putative membrane protein MJ1562. TREMBL:Q8G9A8:32% identity, 52% similarity InterPro:IPR000873; AMP-bind. IPR002114; HPr_SerP_S Pfam:Patched:Patched family 2A067: efflux transporter putative Signal peptide present (Signal P predicted) TMH's 10 (TMHMM predicted); Family membership.
 
     0.903
azo1950
Conserved hypothetical membrane protein. Homology to Daro03003315 of Dechloromonas aromatica of 48% (gi|53729651|ref|ZP_00348492.1|(NBCI ENTREZ)). InterPro: BNR repeat (IPR002860) Pfam: BNR repeat BNR repeats are short repeats never found closer than 40 residues together, which suggests that the repeat is structurally longer. These repeats are found in many glycosyl hydrolases as well as other extracellular proteins of unknown function. no singal peptide. 1 TMHs.
 
     0.867
oxoO1
Oxygenase component OxoO, of the 2-oxo-1,2-dihydroquinoline 8 monooxygenase protein. Enzyme involved in the second step of quinoline degradation by P. putida 86. Involved in bacterial aromatic compounds degradation; Function unclear.
  
     0.693
oxoO2
Oxygenase component OxoO, of the 2-oxo-1,2-dihydroquinoline 8 monooxygenase protein. Enzyme involved in the second step of quinoline degradation by P. putida 86. Involved in bacterial aromatic compounds degradation. InterPro: Rieske iron-sulfur protein 2Fe-2S subunit arcC: carbamate kinase; Function unclear.
  
     0.693
azo0203
Conserved hypothetical membrane protein; TREMBL:Q82XH5: 33% identity, 44% similarity InterPro:IPR007404; DUF457. Pfam: PF04307; DUF457 fnt: formate/nitrite transporter Non-secretory protein with signal peptide probability of 0.391 TMHMM predicted 4 transmembrane helices; Conserved hypothetical protein.
  
     0.644
azo1959
Hypothetical protein SignalP reporting Non-secretory protein.
  
     0.537
azo3760
Hypothetical secreted protein. No good homology of the entire protein to the data bank. Has PF06097,Bacterial protein of unknown function (DUF945);IPR010352; This family consists of several hypothetical bacterial proteins of unknown function. No TMHs Siganl peptide present.
  
     0.526
azo2928
Conserved hypothetical protein. Homology to Rgel02003612 of Rubrivivax gelatinosus PM1 of 51% (gi|47572157|ref|ZP_00242203.1|(NBCI ENTREZ)). Pfam: This family ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. This family of proteins have two conserved Glycines at the COOH terminus. MoaD, a protein involved sulphur transfer in molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end. no signal peptide. no TMHs.
  
     0.476
xylF
2-hydroxy-muconic semialdehyde hydrolase; TREMBL:Q93JW6: 67% identity, 81% similarity. 2-hydroxymuconic semialdehyde hydrolase (HMSH). hydrolysis of C-C bonds in ketonic substances CONVERSION OF 2-HYDROXYMUCONIC ACID SEMIALDEHYDE TO 2-HYDROXYPENT-24-DIENOATE. Pfam: abhydrolase: alpha/Beta hydrolase fold; thioesterase domain Absence of transmembrane helices (TMHMM predicted) prfB: peptide chain release factor 2; High confidence in function and specificity.
  
     0.448
Your Current Organism:
Azoarcus sp. BH72
NCBI taxonomy Id: 62928
Other names: A. sp. BH72
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