cspA protein (Azoarcus sp. BH72) - STRING interaction network

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second shell of interactors

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Predicted Interactions

gene neighborhood

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textmining

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protein homology

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Score

cspA

Cold shock-like protein,; High confidence in function and specificity. (69 aa)

Predicted Functional Partners:

deaD

0.709

rpsL

0.667

rplO

0.614

rplT

0.610

rpmA

0.608

rpsQ

0.606

rplS

0.598

rpsE

0.598

rplC

0.598

rpoZ

0.593

Your Current Organism:

Azoarcus sp. BH72

NCBI taxonomy Id: 62928
Other names: A. sp. BH72

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cspA	deaD	azo2121	azo2122	Cold shock-like protein,; High confidence in function and specificity.	ATP-dependent RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	0.709
cspA	rplC	azo2121	azo3417	Cold shock-like protein,; High confidence in function and specificity.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.598
cspA	rplO	azo2121	azo3398	Cold shock-like protein,; High confidence in function and specificity.	50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.614
cspA	rplS	azo2121	azo2901	Cold shock-like protein,; High confidence in function and specificity.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.598
cspA	rplT	azo2121	azo1082	Cold shock-like protein,; High confidence in function and specificity.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.610
cspA	rpmA	azo2121	azo3168	Cold shock-like protein,; High confidence in function and specificity.	50S ribosomal protein L27; High confidence in function and specificity; Belongs to the bacterial ribosomal protein bL27 family.	0.608
cspA	rpoZ	azo2121	azo3952	Cold shock-like protein,; High confidence in function and specificity.	DNA-directed RNA polymerase; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.593
cspA	rpsE	azo2121	azo3400	Cold shock-like protein,; High confidence in function and specificity.	30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.	0.598
cspA	rpsL	azo2121	azo3422	Cold shock-like protein,; High confidence in function and specificity.	30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.667
cspA	rpsQ	azo2121	azo3408	Cold shock-like protein,; High confidence in function and specificity.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.606
deaD	cspA	azo2122	azo2121	ATP-dependent RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	Cold shock-like protein,; High confidence in function and specificity.	0.709
deaD	rplC	azo2122	azo3417	ATP-dependent RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.894
deaD	rplO	azo2122	azo3398	ATP-dependent RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.834
deaD	rplT	azo2122	azo1082	ATP-dependent RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.483
deaD	rpmA	azo2122	azo3168	ATP-dependent RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	50S ribosomal protein L27; High confidence in function and specificity; Belongs to the bacterial ribosomal protein bL27 family.	0.483
deaD	rpoZ	azo2122	azo3952	ATP-dependent RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	DNA-directed RNA polymerase; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.611
deaD	rpsE	azo2122	azo3400	ATP-dependent RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.	0.829
deaD	rpsL	azo2122	azo3422	ATP-dependent RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.540
deaD	rpsQ	azo2122	azo3408	ATP-dependent RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.676
rplC	cspA	azo3417	azo2121	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Cold shock-like protein,; High confidence in function and specificity.	0.598