STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
azo2400Putative TonB outer membrane receptor protein.31% TonB_boxC. Pfam:PF00593; TonB_dep_Rec; 1. Signal peptide present; Function unclear. (738 aa)    
Predicted Functional Partners:
azo3017
Outer membrane porin protein 32 precursor (OMP32). Forms anion selective channels; Specificity unclear.
    
 0.834
azo2401
Conserved hypothetical secreted protein. Homology to rsp0812 of R. solanacearum of 30% (trembl|Q8XRL9). no damians predicted. signal peptide. no TMHs; Conserved hypothetical protein.
 
     0.833
azo3290
Major outer membrane protein P.IB precursor (Protein IB) (PIB) (Porin). Serves as a slightly cation selective porin. InterPro: General diffusion Gram-negative porins L12: ribosomal protein L7/L12; Function unclear.
  
 
 0.830
azo3291
Outer membrane porin protein 32 precursor (OMP32). Forms anion selective channels. InterPro: General diffusion Gram-negative porins 2A0310: amino acid permease (yeast); Function unclear.
  
 
 0.826
barA
Putative sensor-regulator protein,; Specificity unclear.
     
 0.767
wspR2
Probable two-component response regulator,; High confidence in function and specificity.
       0.762
wza
Conserved hypothetical polysaccharid export protein. Homology to wza of Azoarcus sp. EbN1 of 80%. Pfam: Polysaccharide biosynthesis/export protein. This is a family of periplasmic proteins involved in polysaccharide biosynthesis and/or export. No TMHs. Signal peptide present., ; Family membership.
  
  
  0.755
gumB
Putative capsule polysaccharide export protein precursor.May be involved in polysaccharide polymerization or transport. 36% Poly_export. Pfam:PF02563; Poly_export; 1. Signal peptide: present; Family membership.
  
  
  0.744
irgA2
Putative TonB-dependent receptor; 24% TonB_boxC. Pfam:PF00593; TonB_dep_Rec; 1. Signal peptide present; High confidence in function and specificity.
  
     0.743
ompA1
Outer membrane protein P.III precursor (Gonococcal protein III) (PIII). InterPro: Bacterial outer membrane protein; High confidence in function and specificity.
  
  
 0.723
Your Current Organism:
Azoarcus sp. BH72
NCBI taxonomy Id: 62928
Other names: A. sp. BH72
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