STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dctQ4TRAP-type C4-dicarboxylate transport system, small permease component. The dct locus encodes a high-affinity transport system for the C4-dicarboxylates malate,succinate, and fumarate. 22% DctM.IPR007387; DctQ.IPR000252; DedA.IPR004681; TRAP_transptDctM. Pfam:PF06808; DctM; 1.PF04290; DctQ; 1.PF00597; DedA; 1. TIGRFAMs:TIGR00786; dctM; 1; Specificity unclear. (167 aa)    
Predicted Functional Partners:
dctM4
Similar to a putative large integral C4-dicarboxylate membrane transport protein from W. succinogenes.DctM: TRAP dicarboxylate transporter. TREMBL:Q9ZEJ2 InterPro:IPR010656; DctM.IPR000252; DedA.IPR000524; HTH_GntR.IPR004681; TRAP_transptDctM. Pfam:PF06808; DctM; 1.PF00597; DedA; 1. TIGRFAMs:TIGR00786; dctM; 1. TMHelix: 12. Signal peptide:present; Specificity unclear.
 
 0.954
dctP3
Putative C4-dicarboxylate-binding periplasmic protein; TRAP-dicarboxylate transporter. Binds c4-dicarboxylates; part of the binding-protein-dependent transport system for uptake of C4-dicarboxylates. 23% TRAP_transptDctP. Pfam:PF03480; SBP_bac_7; 1. TIGRFAMs:TIGR00787; dctP; 1. Signal peptide: present; Specificity unclear.
 
  
 0.835
dctM5
TRAP-type C4-dicarboxylate transport system, large permease component,DctM. The dct locus encodes a high-affinity transport system for the C4-dicarboxylates malate,succinate, and fumarate. 25% DctM.IPR000252; DedA.IPR000524; HTH_GntR.IPR004681; TRAP_transptDctM. Pfam:PF06808; DctM; 1.PF00597; DedA; 1. TIGRFAMs:TIGR00786; dctM; 1. TMHelix: 11; Specificity unclear.
 
 0.791
dctM1
TRAP-type C4-dicarboxylate transport system, large permease component, DctM.The Dct locus encodes a high-affinity transport system for the C4-dicarboxylates malate,succinate, and fumarate. 34% DctM.IPR000252; DedA.IPR004681; TRAP_transptDctM. Pfam:PF06808; DctM; 1.PF00597; DedA; 1. TIGRFAMs:TIGR00786; dctM; 1. Signal peptide: present. TMhelix:11; Specificity unclear.
 
 0.783
dctM3
Putative TRAP-type C4-dicarboxylate transport system, large permease; The dct locus encodes a high-affinity transport system for the C4-dicarboxylates malate,succinate, and fumarate. 38% DctM.IPR000252; DedA.IPR004681; TRAP_transptDctM. Pfam:PF06808; DctM; 1.PF00597; DedA; 1. TIGRFAMs:TIGR00786; dctM; 1. Signal peptide:present. TMhelix:11; Specificity unclear.
 
 0.753
dctM2
Putative TRAP-type C4-dicarboxylate transport system, large permease; The dct locus encodes a high-affinity transport system for the C4-dicarboxylates malate,succinate, and fumarate. 60% DctM.IPR000252; DedA.IPR004681; TRAP_transptDctM. Pfam:PF06808; DctM; 1.PF00597; DedA; 1. TIGRFAMs:TIGR00786; dctM; 1. TMhelix:13. Signal peptide: present; High confidence in function and specificity.
 
 0.751
azo2796
Putative large permease component of TRAP-type transporter; Similar to TREMBL:Q7WQP2 (61% identity); TREMBL:Q7W1R6 (61% identity); TREMBL:Q8G2H8 (50% identity). TIGRFAM (TIGR00786): TRAP transporter, DctM subunit. TMHMM predicting 14 transmembrane helices; Specificity unclear.
  
 0.660
matA
Putative malonyl-CoA decarboxylase; Catalyzes the conversion of malonyl-CoA to acetyl-CoA. In the fatty acid biosynthesis MCD selectively removes malonyl-CoA and thus assures that methyl-malonyl-CoA is the only chain elongating substrate for fatty acid synthase and that fatty acids with multiple methyl side chains are produced. 40% Malonyl_CoA_deC. Pfam:PF05292; MCD; 1; High confidence in function and specificity.
  
 0.654
azo0798
Hypothetical secreted protein. No homology to the data bank. No domains predicted. No TMHs. Signal peptide present.
  
     0.626
dctP1
Putative ABC transporter periplasmic binding protein, DctP: TRAP dicarboxylate transporter.Binds C4-dicarboxylates; part of the binding-protein- dependent transport system for uptake of c4-dicarboxylates. 28% TRAP_transptDctP. Pfam:PF03480; SBP_bac_7; 1. TIGRFAMs:TIGR00787; dctP; 1. Signal peptide:present. TMhelix:1; Specificity unclear.
 
  
 0.601
Your Current Organism:
Azoarcus sp. BH72
NCBI taxonomy Id: 62928
Other names: A. sp. BH72
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