Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pobA4-hydroxybenzoate 3-monooxygenase; P-hydroxybenzoate hydroxylase InterPro: Aromatic-ring hydroxylase (flavoprotein monooxygenase); High confidence in function and specificity. (395 aa)    
Predicted Functional Partners:
azo3595
Hypothetical protein predicted by Glimmer/Critica.
   
 0.864
ligB2
Protocatechuate 4,5-dioxygenase beta chain subunit,having 91% similarity(85% identity)to TrEMBL;Q6N0Q9,Protocatechuate 3,4-dioxygenase beta chain [pcaH] [Xanthomonas axonopodis (pv. citri)]Swiss-Prot: P22636;PF02900;IPR004183; Catalytic LigB subunit of aromatic ring-opening dioxygenase.The LigAB enzyme (a protocatechuate 4,5-dioxygenase EC: 1.13.11.8), of Sphingomonas paucimobilis oxidizes protocatechuate (or 3,4-dihydroxybenzoic acid, PCA). The enzyme belongs to the class III extradiol-type catecholic dioxygenase family,which catalyzes the ring-opening reaction of protocatechuate and [...]
 
  
 0.843
pobR1
pobR. Transcriptional regulator AraC family. InterPro: AraC type helix-turn-helix pdxH: pyridoxamine 5-phosphate oxidase; Function unclear.
 
  
 0.838
ubiG
3-demethylubiquinone-9 3-O-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.
   
 0.807
ligA2
[EC:1.13.11.8], Protocatechuate 4,5-dioxygenase alpha chain (EC 1.13.11.8) (4,5-PCD)., Aromatic-ring-opening dioxygenase LigAB, LigA subunit; High confidence in function and specificity.
 
  
 0.789
ligB1
Protocatechuate 4,5-dioxygenase beta chain subunit,having 63% similarity(48% identity)to TrEMBL;Q8PP10,Protocatechuate 3,4-dioxygenase beta chain [pcaH] [Xanthomonas axonopodis (pv. citri)] Swiss-Prot: P22636 PF02900;IPR004183; Catalytic LigB subunit of aromatic ring-opening dioxygenase.The LigAB enzyme (a protocatechuate 4,5-dioxygenase EC: 1.13.11.8), of Sphingomonas paucimobilis oxidizes protocatechuate (or 3,4-dihydroxybenzoic acid, PCA). The enzyme belongs to the class III extradiol-type catecholic dioxygenase family,which catalyzes the ring-opening reaction of protocatechuate and [...]
 
  
 0.778
azo0715
Conserved hypothetical protein. Homology to DP0001 of Desulfotalea psychrophila of 43% (gnl|keqq|dps:DP0001(KEGG)). No domains predicted. No signal peptide. No TMHs.
   
 0.771
coq7
Ubiquinone biosynthesis protein; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.
    
 0.740
hoxF
Probable hydrogen dehydrogenase, alpha subunit. Homology to hoxF of A. eutrophus of 41% (sprot|HOXF_ALCEU). SUBUNITS ALPHA AND GAMMA OF HOXS CONSTITUTE AN NADH-OXIDOREDUCTASE. InterPro: Respiratory-chain NADH dehydrogenase 51 Kd subunit (IPR001949); Respiratory-chain NADH dehydrogenase 24 Kd subunit (IPR002023) Pfam: Respiratory-chain NADH dehydrogenase 24 Kd subunit; Respiratory-chain NADH dehydrogenase 51 Kd subunit no signal peptide no TMHs; High confidence in function and specificity.
     
 0.737
fdh1B
Probable formate dehydrogenase (NADP+), beta subunit Homology to fdh1B of M. extorpuens of 55% (trembl|Q8KTI8) Pfam: Respiratory-chain NADH dehydrogenase 24 kD subunit; Respiratory-chain NADH dehydrogenase 51 kD subunit. no signal peptide no TMHs; High confidence in function and specificity.
     
 0.737
Your Current Organism:
Azoarcus sp. BH72
NCBI taxonomy Id: 62928
Other names: A. sp. BH72
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