azo2461 protein (Azoarcus sp. BH72) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

azo2461

Conserved hypothetical protein. Homology to mll6889 of M.loti. of 58% (trembl|Q987V8(SRS)). No domains predicted. No TMHs. No signal peptide. (436 aa)

Predicted Functional Partners:

azo2467

0.838

azo2591

0.747

azo2460

0.739

pilY1A

0.732

azo3575

0.682

azo2178

0.671

azo2459

0.650

azo2462

0.649

azo3166

0.626

azo2464

0.593

Your Current Organism:

Azoarcus sp. BH72

NCBI taxonomy Id: 62928
Other names: A. sp. BH72

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
azo2178	azo2461	azo2178	azo2461	probABLE TYPE 4 FIMBRIAL BIOGENESIS RELATEDTRANSMEMBRANE PROTEIN; Family membership.	Conserved hypothetical protein. Homology to mll6889 of M.loti. of 58% (trembl\|Q987V8(SRS)). No domains predicted. No TMHs. No signal peptide.	0.671
azo2178	azo2591	azo2178	azo2591	probABLE TYPE 4 FIMBRIAL BIOGENESIS RELATEDTRANSMEMBRANE PROTEIN; Family membership.	Conserved hypothetical secreted protein. Homology to Daro03002418 of Dechloromonas aromatica of 58% (gi\|53730135\|ref\|ZP_00150721.2\|(NBCI ENTREZ)). No domains predicted. No TMHs. signal peptide present.	0.522
azo2178	azo3166	azo2178	azo3166	probABLE TYPE 4 FIMBRIAL BIOGENESIS RELATEDTRANSMEMBRANE PROTEIN; Family membership.	Hypothetical Protein,20% identity to TrEMBL;Q9HUK7. Very Bad homology with the hits in the DB over entire length of protein. No substantial good hits available. No signal peptide or TMH reported present.	0.570
azo2178	pilY1A	azo2178	azo2175	probABLE TYPE 4 FIMBRIAL BIOGENESIS RELATEDTRANSMEMBRANE PROTEIN; Family membership.	Putative type 4 pilus biogenesis protein; PilY1 is a large protein with C-terminal homology to the PilC2 protein of Neisseria gonorrhoeae, thought to be a fimbrial tip-associated adhesin, and which, like PilY1, is involved in fimbrial assembly. Similar to trembl\|Q8XW00 (31%). Pfam (PF01839): FG-GAP repeat SignalP reporting Signal peptide; Function unclear.	0.978
azo2459	azo2460	azo2459	azo2460	Hypothetical protein, has very weak homolgy with hits in the database. NO motifs,domains, signal peptide or TMH present.	Conserved hypothetical protein. Homology to mll6891 of Mesorhizobium loti of 37% (gi\|14026496\|dbj\|BAB53093.1\|). No domains predicted. No TMHs. No signal peptide.	0.717
azo2459	azo2461	azo2459	azo2461	Hypothetical protein, has very weak homolgy with hits in the database. NO motifs,domains, signal peptide or TMH present.	Conserved hypothetical protein. Homology to mll6889 of M.loti. of 58% (trembl\|Q987V8(SRS)). No domains predicted. No TMHs. No signal peptide.	0.650
azo2459	azo2462	azo2459	azo2462	Hypothetical protein, has very weak homolgy with hits in the database. NO motifs,domains, signal peptide or TMH present.	Hypothetical secreted protein. No homology of the entire protein to the data bank. No domains predicted. No TMHs. Signal peptide present.	0.511
azo2459	azo2464	azo2459	azo2464	Hypothetical protein, has very weak homolgy with hits in the database. NO motifs,domains, signal peptide or TMH present.	Conserved hypothetical protein. Homology to mll6883 of M.loti of 58% (trembl\|Q987W1(SRS)). No domains predicted. No TMHs. No signal peptide.	0.453
azo2459	azo2467	azo2459	azo2467	Hypothetical protein, has very weak homolgy with hits in the database. NO motifs,domains, signal peptide or TMH present.	Conserved hypothetical protein. Homology to mll6881 of M.loti of 49% (trembl\|Q987W3(SRS)). No domains predicted. No TMHs. No signal peptide.	0.404
azo2460	azo2459	azo2460	azo2459	Conserved hypothetical protein. Homology to mll6891 of Mesorhizobium loti of 37% (gi\|14026496\|dbj\|BAB53093.1\|). No domains predicted. No TMHs. No signal peptide.	Hypothetical protein, has very weak homolgy with hits in the database. NO motifs,domains, signal peptide or TMH present.	0.717
azo2460	azo2461	azo2460	azo2461	Conserved hypothetical protein. Homology to mll6891 of Mesorhizobium loti of 37% (gi\|14026496\|dbj\|BAB53093.1\|). No domains predicted. No TMHs. No signal peptide.	Conserved hypothetical protein. Homology to mll6889 of M.loti. of 58% (trembl\|Q987V8(SRS)). No domains predicted. No TMHs. No signal peptide.	0.739
azo2460	azo2462	azo2460	azo2462	Conserved hypothetical protein. Homology to mll6891 of Mesorhizobium loti of 37% (gi\|14026496\|dbj\|BAB53093.1\|). No domains predicted. No TMHs. No signal peptide.	Hypothetical secreted protein. No homology of the entire protein to the data bank. No domains predicted. No TMHs. Signal peptide present.	0.603
azo2460	azo2464	azo2460	azo2464	Conserved hypothetical protein. Homology to mll6891 of Mesorhizobium loti of 37% (gi\|14026496\|dbj\|BAB53093.1\|). No domains predicted. No TMHs. No signal peptide.	Conserved hypothetical protein. Homology to mll6883 of M.loti of 58% (trembl\|Q987W1(SRS)). No domains predicted. No TMHs. No signal peptide.	0.534
azo2460	azo2467	azo2460	azo2467	Conserved hypothetical protein. Homology to mll6891 of Mesorhizobium loti of 37% (gi\|14026496\|dbj\|BAB53093.1\|). No domains predicted. No TMHs. No signal peptide.	Conserved hypothetical protein. Homology to mll6881 of M.loti of 49% (trembl\|Q987W3(SRS)). No domains predicted. No TMHs. No signal peptide.	0.451
azo2461	azo2178	azo2461	azo2178	Conserved hypothetical protein. Homology to mll6889 of M.loti. of 58% (trembl\|Q987V8(SRS)). No domains predicted. No TMHs. No signal peptide.	probABLE TYPE 4 FIMBRIAL BIOGENESIS RELATEDTRANSMEMBRANE PROTEIN; Family membership.	0.671
azo2461	azo2459	azo2461	azo2459	Conserved hypothetical protein. Homology to mll6889 of M.loti. of 58% (trembl\|Q987V8(SRS)). No domains predicted. No TMHs. No signal peptide.	Hypothetical protein, has very weak homolgy with hits in the database. NO motifs,domains, signal peptide or TMH present.	0.650
azo2461	azo2460	azo2461	azo2460	Conserved hypothetical protein. Homology to mll6889 of M.loti. of 58% (trembl\|Q987V8(SRS)). No domains predicted. No TMHs. No signal peptide.	Conserved hypothetical protein. Homology to mll6891 of Mesorhizobium loti of 37% (gi\|14026496\|dbj\|BAB53093.1\|). No domains predicted. No TMHs. No signal peptide.	0.739
azo2461	azo2462	azo2461	azo2462	Conserved hypothetical protein. Homology to mll6889 of M.loti. of 58% (trembl\|Q987V8(SRS)). No domains predicted. No TMHs. No signal peptide.	Hypothetical secreted protein. No homology of the entire protein to the data bank. No domains predicted. No TMHs. Signal peptide present.	0.649
azo2461	azo2464	azo2461	azo2464	Conserved hypothetical protein. Homology to mll6889 of M.loti. of 58% (trembl\|Q987V8(SRS)). No domains predicted. No TMHs. No signal peptide.	Conserved hypothetical protein. Homology to mll6883 of M.loti of 58% (trembl\|Q987W1(SRS)). No domains predicted. No TMHs. No signal peptide.	0.593
azo2461	azo2467	azo2461	azo2467	Conserved hypothetical protein. Homology to mll6889 of M.loti. of 58% (trembl\|Q987V8(SRS)). No domains predicted. No TMHs. No signal peptide.	Conserved hypothetical protein. Homology to mll6881 of M.loti of 49% (trembl\|Q987W3(SRS)). No domains predicted. No TMHs. No signal peptide.	0.838