STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
azo2797Putative small permease component of TRAP-type transporter; Similar to TREMBL:Q7WQP3 52% identity); TREMBL:Q92P73 (54% identity); TREMBL:Q8UK53 (48% identity). TMHMM reporting four transmembrane helices; Specificity unclear. (197 aa)    
Predicted Functional Partners:
azo2796
Putative large permease component of TRAP-type transporter; Similar to TREMBL:Q7WQP2 (61% identity); TREMBL:Q7W1R6 (61% identity); TREMBL:Q8G2H8 (50% identity). TIGRFAM (TIGR00786): TRAP transporter, DctM subunit. TMHMM predicting 14 transmembrane helices; Specificity unclear.
 
  
  0.994
azo2795
Putative periplasmic substrate binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.807
gpmB
Probable phosphoglycerate mutase GpmB (phosphoglyceromutase) 0(Pgam). Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate 31% PG/BPGM_mutase. Pfam:PF00300; PGAM; 1; High confidence in function and specificity.
       0.565
azo2284
Putative periplasmic substrate binding protein; Similar to TREMBL:Q9RBR1 (43% identity); TREMBL:Q8GN85 (42% identity); TREMBL:Q87NF7 (23% identity). SignalP predicting signal peptide; Specificity unclear.
 
     0.538
dctM3
Putative TRAP-type C4-dicarboxylate transport system, large permease; The dct locus encodes a high-affinity transport system for the C4-dicarboxylates malate,succinate, and fumarate. 38% DctM.IPR000252; DedA.IPR004681; TRAP_transptDctM. Pfam:PF06808; DctM; 1.PF00597; DedA; 1. TIGRFAMs:TIGR00786; dctM; 1. Signal peptide:present. TMhelix:11; Specificity unclear.
 
     0.474
Your Current Organism:
Azoarcus sp. BH72
NCBI taxonomy Id: 62928
Other names: A. sp. BH72
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