STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
elmSPutative two-component sensor histidine kinase,; Specificity unclear. (489 aa)    
Predicted Functional Partners:
gacA
Probable transcriptional regulator, LuxR family,; Specificity unclear.
 
 0.934
azo1503
Putative two-component response regulator,; Family membership.
 
 0.888
uvrY
Probable two-component response regulator,; Family membership.
 
 0.888
vsrD1
DNA-binding response regulator,; High confidence in function and specificity.
 
 0.885
vsrD2
Probable transcriptional regulator, LuxR family,; Specificity unclear.
 
 0.882
flcA
Probable DNA-binding response regulator, LuxR family,; Specificity unclear.
 
 0.857
azo0648
Putative DNA-binding response regulator, LuxR family,; Function unclear.
 
 0.853
azo2978
Putative TonB-dependent receptor; Similar to FepA, an iron regulated outer membrane protein. FepA is a receptor for the siderophore complex ferric enterobactin and for colcins B and D. INVOLVED IN THE INITIAL STEP OF IRON UPTAKE BY BINDING FERRIC ENTEROBACTIN THAT ALLOWS E. COLI TO EXTRACT IRON FROM THE ENVIRONMENT. Probable tonB-dependent receptor yncD precursor. InterPro: TonB-dependent receptor protein; High confidence in function and specificity.
 
     0.835
azo2450
Putative two-component system sensor protein,; Function unclear.
  
 0.818
azo2976
Conserved hypothetical secreted protein. Homology to PP2677 of P. putida of 35% (trembl|Q88JH2(SRS)). No domains predicted. Signal peptide present. No TMH detected; Conserved hypothetical protein.
 
     0.775
Your Current Organism:
Azoarcus sp. BH72
NCBI taxonomy Id: 62928
Other names: A. sp. BH72
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