STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
azo3025Conserved hypothetical protein. Homology to ra0176 of S. meliloti of 31% (trembl|Q930L9). Pfam: Uncharacterized ACR, YneC family. no signal peptide. no TMHS. (94 aa)    
Predicted Functional Partners:
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
    0.509
azo3024
Hypotheical secreted protein. No homology of the entire protein to the data bank. no domains predicted. no TMHs. signal peptide.
       0.466
azo3023
Probable outer membrane receptor TonB-dependent for iron transport. 41% AAC74533.1 InterPro: IPR000531 TonB_receptor.IPR010105; TonB_siderophor. Pfam: PF00593; TonB_dep_Rec; 1. TonB-box domain; High confidence in function and specificity.
       0.464
azo2457
Putative sensory box histidine kinase,; Function unclear.
     
 0.414
azo2678
Conserved hypothetical protein.
  
   
 0.414
azo3026
Conserved hypothetical secreted protein. Homology to Reut02004453 of Ralstonia metallidurans of 38% (gi|48768314|ref|ZP_00272664.1|(NBCI ENTREZ)). no domains predicted. signal peptide. no TMHs; Conserved hypothetical protein.
       0.400
Your Current Organism:
Azoarcus sp. BH72
NCBI taxonomy Id: 62928
Other names: A. sp. BH72
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