rpsU protein (Azoarcus sp. BH72) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

rpsU

30S ribosomal protein S21; Function unclear; Belongs to the bacterial ribosomal protein bS21 family. (70 aa)

Predicted Functional Partners:

rpsT

0.997

rpsP

0.997

rpsF

0.996

rpsB

0.996

rpsO

0.996

rpsL

0.996

rpsJ

0.995

rpsI

0.994

rpsR

0.993

rpsG

0.991

Your Current Organism:

Azoarcus sp. BH72

NCBI taxonomy Id: 62928
Other names: A. sp. BH72

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rpsB	rpsF	azo1909	azo0718	30S ribosomal protein S2. InterPro: Ribosomal protein S2; High confidence in function and specificity; Belongs to the universal ribosomal protein uS2 family.	RpsF protein; Binds together with S18 to 16S ribosomal RNA.	0.998
rpsB	rpsG	azo1909	azo3421	30S ribosomal protein S2. InterPro: Ribosomal protein S2; High confidence in function and specificity; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.998
rpsB	rpsI	azo1909	azo2759	30S ribosomal protein S2. InterPro: Ribosomal protein S2; High confidence in function and specificity; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal protein S9; High confidence in function and specificity; Belongs to the universal ribosomal protein uS9 family.	0.999
rpsB	rpsJ	azo1909	azo3418	30S ribosomal protein S2. InterPro: Ribosomal protein S2; High confidence in function and specificity; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.997
rpsB	rpsL	azo1909	azo3422	30S ribosomal protein S2. InterPro: Ribosomal protein S2; High confidence in function and specificity; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.998
rpsB	rpsO	azo1909	azo2104	30S ribosomal protein S2. InterPro: Ribosomal protein S2; High confidence in function and specificity; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.998
rpsB	rpsP	azo1909	azo2898	30S ribosomal protein S2. InterPro: Ribosomal protein S2; High confidence in function and specificity; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal protein S16; High confidence in function and specificity; Belongs to the bacterial ribosomal protein bS16 family.	0.998
rpsB	rpsR	azo1909	azo0720	30S ribosomal protein S2. InterPro: Ribosomal protein S2; High confidence in function and specificity; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.999
rpsB	rpsT	azo1909	azo2190	30S ribosomal protein S2. InterPro: Ribosomal protein S2; High confidence in function and specificity; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.996
rpsB	rpsU	azo1909	azo3225	30S ribosomal protein S2. InterPro: Ribosomal protein S2; High confidence in function and specificity; Belongs to the universal ribosomal protein uS2 family.	30S ribosomal protein S21; Function unclear; Belongs to the bacterial ribosomal protein bS21 family.	0.996
rpsF	rpsB	azo0718	azo1909	RpsF protein; Binds together with S18 to 16S ribosomal RNA.	30S ribosomal protein S2. InterPro: Ribosomal protein S2; High confidence in function and specificity; Belongs to the universal ribosomal protein uS2 family.	0.998
rpsF	rpsG	azo0718	azo3421	RpsF protein; Binds together with S18 to 16S ribosomal RNA.	30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.	0.997
rpsF	rpsI	azo0718	azo2759	RpsF protein; Binds together with S18 to 16S ribosomal RNA.	30S ribosomal protein S9; High confidence in function and specificity; Belongs to the universal ribosomal protein uS9 family.	0.998
rpsF	rpsJ	azo0718	azo3418	RpsF protein; Binds together with S18 to 16S ribosomal RNA.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.997
rpsF	rpsL	azo0718	azo3422	RpsF protein; Binds together with S18 to 16S ribosomal RNA.	30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.	0.997
rpsF	rpsO	azo0718	azo2104	RpsF protein; Binds together with S18 to 16S ribosomal RNA.	30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.	0.998
rpsF	rpsP	azo0718	azo2898	RpsF protein; Binds together with S18 to 16S ribosomal RNA.	30S ribosomal protein S16; High confidence in function and specificity; Belongs to the bacterial ribosomal protein bS16 family.	0.997
rpsF	rpsR	azo0718	azo0720	RpsF protein; Binds together with S18 to 16S ribosomal RNA.	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.999
rpsF	rpsT	azo0718	azo2190	RpsF protein; Binds together with S18 to 16S ribosomal RNA.	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.995
rpsF	rpsU	azo0718	azo3225	RpsF protein; Binds together with S18 to 16S ribosomal RNA.	30S ribosomal protein S21; Function unclear; Belongs to the bacterial ribosomal protein bS21 family.	0.996