STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yeaSConserved hypothetical transport membrane protein. Homology to rsc1520 of R. solanacearum of 59% (trembl|Q8XZ84). Pfam: LysE type translocator. Tigrfam: 2A76: Homoserine/Threonine efflux protein. no signal peptide. probable 6 TMHs; Family membership. (218 aa)    
Predicted Functional Partners:
azo2479
Conserved hypothetical membrane protein. Homology to VV12384 of Vibrio vulnificus of 60% (trembl|Q8DA26). No domains predicted. TMHMM2 reporting 1 TMH present. No signal peptide present; Conserved hypothetical protein.
    
   0.612
azo3544
Probable 4-hydroxybutyrate coenzyme A transferase. Homology to cat2 of C. kluyveri of 43% (sprot|CAT2_CLOKL) InterPro: Acetyl-CoA hydrolase/transferase (IPR003702) Pfam: Acetyl-CoA hydrolase/transferase no signal peptide no TMHS; Family membership.
       0.588
azo0329
Conserved hypothetical protein. Homology to SCO5300 of Streptomyces coelicolor of 46% (tremble:Q9XAE9). No domains predicted. No TMHs. No signal peptide.
  
     0.412
Your Current Organism:
Azoarcus sp. BH72
NCBI taxonomy Id: 62928
Other names: A. sp. BH72
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.