STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
azo3662Conserved hypothetical secreted proteinn. Homology to ebA3326 Azoarcus sp. EbN1 of 47% (gnl|keqq|eba:ebA3326(KEGG)). no domains predicted. signal peptide. no TMHs; Conserved hypothetical protein. (225 aa)    
Predicted Functional Partners:
pyrE
Official Name Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
       0.800
azo3757
Modification methylase TaqI (EC 2.1.1.72) (Adenine-specific methyltransferase TaqI) (M.TaqI). THIS METHYLASE RECOGNIZES THE DOUBLE-STRANDED SEQUENCE TCGA CAUSES SPECIFIC METHYLATION ON A-4 ON BOTH STRANDS AND PROTECTS THE DNA FROM CLEAVAGE BY THE TAQI ENDONUCLEASE. InterPro: N6 adenine-specific DNA methyltransferase N12 class; Family membership.
 
     0.745
fimV2
Putative type 4 pilus biogenesis; In Pseudomonas aeruginosa, FimV is probable involved in remodelling of the peptidoglycan layer to enable assembly of the type IV fimbrial structure and machinery. And it is also required for twitching motility. Similar to trembl|O87015 (26%). Pfam (PF05489): Phage Tail Protein X SignalP reporting Signal peptide; Function unclear.
  
     0.709
phaP
Putative phasin protein PhaP.A family of small proteins found associated with inclusions in bacterial cells. Most associate with polyhydroxyalkanoate (PHA) inclusions, the most common of which consist of polyhydroxybutyrate (PHB). These are designated granule-associate proteins or phasins. However, the member from Magnetospirillum sp. AMB-1 is called a magnetic particle membrane-specific GTPase. TrEMBL: Q93QF2 InterPro:IPR010127,TIGR01841 NO TMH Present No Signal Peptide Present; Family membership.
  
     0.669
azo3521
Conserved hypothetical peptidase. Homology to ebA3686 of Azoarcus sp. EbN1 of 45% (gnl|keqq|eba:ebA3686(KEGG)). Pfam: Peptidase family M48. signal peptide. 1 TMHs; Conserved hypothetical protein.
  
     0.635
azo1368
Conserved hypothetical protein. Homology to ebA7035 of Azoarcus sp. EbN1 of 79% (gnl|keqq|eba:ebA7035(KEGG)). No domains predicted. No TMHs. No signal peptide.
  
     0.633
azo1044
Conserved hypothetical membrane protein. Homology to ebA4769 of Azoarcus sp. EbN1 of 53% (gnl|keqq|eba:ebA4769(KEGG)). Pfam: Cobalt transport protein. signal peptide. 3 TMHs; Family membership.
  
     0.614
azo0225
Hypothetical secreted protein. No homology to the data bank no domains predicted signal peptide no TMHs.
  
     0.611
azo3661
Conserved hypothetical molybdopterin oxidoreductase. Homology to rsc2859 of R. solanacearum of 60% (trembl|Q8XVH2). Tigrfam: bisC_fam: molybdopterin guanine dinucleotide-containing S/N-oxidoreductases. Pfam: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain. Helixturnhelix motif. no signal sequenz. no TMHs; Conserved hypothetical protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
       0.608
azo1836
Hypothetical protein sharing 76% similarity(61% identity) with Hypothetical protein [Thauera aromatica]TrEMBl O87938. Has pfam06980, DUF1302 domain,Protein of unknown function (DUF1302). This family contains a number of hypothetical bacterial proteins of unknown function that are approximately 600 residues long. Most family members seem to be from Pseudomonas.(IPR010727) No Signal peptide or TMH being reported to be present; Function unclear.
  
     0.607
Your Current Organism:
Azoarcus sp. BH72
NCBI taxonomy Id: 62928
Other names: A. sp. BH72
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