STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS09825.1Hypothetical protein. (217 aa)    
Predicted Functional Partners:
SDS09872.1
DNA-binding transcriptional regulator, AcrR family.
 
     0.879
SDT07927.1
DNA-binding transcriptional regulator, AcrR family.
 
     0.767
SDT08004.1
CAAX protease self-immunity.
 
     0.654
SDS25309.1
Hypothetical protein.
  
     0.586
SDS79211.1
Hypothetical protein.
  
     0.552
SDS61566.1
DNA-binding transcriptional regulator, AcrR family.
 
     0.502
SDS79167.1
LPXTG-motif cell wall anchor domain-containing protein.
  
     0.473
SDS27444.1
Hypothetical protein.
  
     0.423
SDS48452.1
PEP-utilising enzyme, mobile domain.
  
     0.421
SDS61616.1
Hypothetical protein.
  
     0.417
Your Current Organism:
Brevibacterium sandarakinum
NCBI taxonomy Id: 629680
Other names: B. sandarakinum, Brevibacterium sandarakinum Kampfer et al. 2010, Brevibacterium sp. 01-Je-003, CCM 7649, DSM 22082, strain 01-Je-003
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.