STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS28395.1D-lactate dehydrogenase. (956 aa)    
Predicted Functional Partners:
SDT12568.1
Glutamate synthase (NADH) large subunit.
    
 0.920
SDS87372.1
Succinate dehydrogenase subunit B.
   
 0.909
SDS21922.1
Electron transfer flavoprotein alpha subunit apoprotein.
  
 0.885
SDS32640.1
Electron transfer flavoprotein alpha subunit apoprotein.
  
 0.885
SDS51828.1
Hypothetical protein.
  
 
 0.881
SDS21873.1
Electron transfer flavoprotein beta subunit.
  
 0.880
SDS32683.1
Electron transfer flavoprotein beta subunit.
  
 0.880
SDR69053.1
2-oxoglutarate dehydrogenase E1 component.
  
 
 0.874
SDS25688.1
Hydroxyacylglutathione hydrolase.
    
 0.871
SDS74630.1
Hydroxyacylglutathione hydrolase.
    
 0.871
Your Current Organism:
Brevibacterium sandarakinum
NCBI taxonomy Id: 629680
Other names: B. sandarakinum, Brevibacterium sandarakinum Kampfer et al. 2010, Brevibacterium sp. 01-Je-003, CCM 7649, DSM 22082, strain 01-Je-003
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.