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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS28395.1D-lactate dehydrogenase. (956 aa)    
Predicted Functional Partners:
SDT12568.1
Glutamate synthase (NADH) large subunit.
    
 0.952
SDS87372.1
Succinate dehydrogenase subunit B.
   
 0.932
SDT17062.1
Menaquinol-cytochrome c reductase cytochrome c1 subunit precursor.
   
 0.906
SDR70215.1
Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
  
 
  0.902
SDS14876.1
Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
  
 
  0.902
SDS89802.1
L-lactate dehydrogenase complex protein LldF.
 
 0.901
SDS25688.1
Hydroxyacylglutathione hydrolase.
    
 0.899
SDS74630.1
Hydroxyacylglutathione hydrolase.
    
 0.899
SDS26586.1
Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
 0.886
SDR71697.1
L-lactate dehydrogenase (cytochrome).
  
 0.862
Your Current Organism:
Brevibacterium sandarakinum
NCBI taxonomy Id: 629680
Other names: B. sandarakinum, Brevibacterium sandarakinum Kampfer et al. 2010, Brevibacterium sp. 01-Je-003, CCM 7649, DSM 22082, strain 01-Je-003
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