STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0C4EUL8Uncharacterized protein. (213 aa)    
Predicted Functional Partners:
PTTG_06614
Uncharacterized protein.
    
 0.879
A0A0C4F5U8
RRM domain-containing protein.
    
 0.872
PTTG_08369
RRM domain-containing protein.
  
 0.868
PTTG_05990
Uncharacterized protein.
    
 0.852
PTTG_03690
Uncharacterized protein.
    
 0.852
PTTG_07338
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.850
PTTG_03988
Small nuclear ribonucleoprotein Sm D3.
    
 0.843
PTTG_26258
Small nuclear ribonucleoprotein F.
    
 0.842
PTTG_05734
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.839
A0A0C4EW53
RRM domain-containing protein.
  
 
 0.832
Your Current Organism:
Puccinia triticina
NCBI taxonomy Id: 630390
Other names: P. triticina 1-1 BBBD Race 1, Puccinia triticina 1-1 BBBD Race 1
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