STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDR82432.1Trk system potassium uptake protein TrkA. (226 aa)    
Predicted Functional Partners:
SDR82404.1
Trk system potassium uptake protein TrkA.
 
  
 0.944
SDS68186.1
Potassium uptake protein, TrkH family.
  
 
 0.920
SDR82375.1
Amino acid transporter.
 
     0.835
SDR82485.1
Hypothetical protein.
  
     0.735
nadE
NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
  0.605
SDR87819.1
Molybdopterin synthase subunit MoaE.
   
    0.601
SDR82338.1
tRNA/tmRNA/rRNA uracil-C5-methylase, TrmA/RlmC/RlmD family; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.540
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
   
    0.480
SDS45209.1
Uroporphyrinogen III methyltransferase / synthase.
  
    0.455
SDS82239.1
uroporphyrinogen-III synthase.
  
    0.436
Your Current Organism:
Microlunatus soli
NCBI taxonomy Id: 630515
Other names: CCM 7685, DSM 21800, M. soli, Microlunatus soli Kampfer et al. 2010, Microlunatus sp. CC-012602, strain CC-012602, strain CC-12602
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