STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS08509.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (240 aa)    
Predicted Functional Partners:
SDS08552.1
Signal transduction histidine kinase.
 
  0.927
SDT29938.1
Signal transduction histidine kinase.
   
 0.896
SDT05422.1
Signal transduction histidine kinase.
 
  0.827
SDS95319.1
Signal transduction histidine kinase.
 
  0.819
SDS96084.1
Signal transduction histidine kinase.
  
  0.818
SDS02620.1
Signal transduction histidine kinase.
 
  0.814
SDS28428.1
Signal transduction histidine kinase.
 
  0.795
SDR91030.1
Signal transduction histidine kinase.
  
  0.794
SDS83094.1
Signal transduction histidine kinase.
  
  0.790
SDS48099.1
Two-component system, NarL family, sensor histidine kinase UhpB.
 
  0.786
Your Current Organism:
Microlunatus soli
NCBI taxonomy Id: 630515
Other names: CCM 7685, DSM 21800, M. soli, Microlunatus soli Kampfer et al. 2010, Microlunatus sp. CC-012602, strain CC-012602, strain CC-12602
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