STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS25319.1Lipoprotein-anchoring transpeptidase ErfK/SrfK. (433 aa)    
Predicted Functional Partners:
SDT39692.1
Cobalamin-independent synthase, Catalytic domain.
  
     0.603
SDS42922.1
Protein of unknown function.
  
     0.598
SDS25349.1
Hypothetical protein.
       0.551
SDT24386.1
Cytidine deaminase.
  
     0.522
SDS42224.1
L,D-transpeptidase catalytic domain.
  
   
 0.484
SDS25374.1
Histidine triad (HIT) family protein.
  
    0.440
SDT29046.1
Protein of unknown function.
  
     0.424
SDS46169.1
Hypothetical protein.
  
     0.409
lspA
Signal peptidase II Aspartic peptidase. MEROPS family A08; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
     
 0.402
Your Current Organism:
Microlunatus soli
NCBI taxonomy Id: 630515
Other names: CCM 7685, DSM 21800, M. soli, Microlunatus soli Kampfer et al. 2010, Microlunatus sp. CC-012602, strain CC-012602, strain CC-12602
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