STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDS56361.1Galactonate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (386 aa)    
Predicted Functional Partners:
SDS56310.1
Regulator of RNase E activity RraA.
       0.773
SDT27184.1
Mannonate dehydratase.
  
  
 
0.593
SDS73242.1
D-mannonate dehydratase.
  
  
 
0.576
SDR86766.1
Galactonate dehydratase.
  
  
 
0.555
SDT40973.1
Galactonate dehydratase.
  
  
 
0.549
SDT12401.1
L-alanine-DL-glutamate epimerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
  
 
0.493
SDS56199.1
Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain-containing protein; Belongs to the binding-protein-dependent transport system permease family.
  
    0.480
SDS56239.1
Peptide/nickel transport system permease protein.
  
    0.477
SDS56168.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.476
SDS56275.1
Peptide/nickel transport system substrate-binding protein.
       0.476
Your Current Organism:
Microlunatus soli
NCBI taxonomy Id: 630515
Other names: CCM 7685, DSM 21800, M. soli, Microlunatus soli Kampfer et al. 2010, Microlunatus sp. CC-012602, strain CC-012602, strain CC-12602
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