STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT06387.1Amino acid permease (GABA permease). (508 aa)    
Predicted Functional Partners:
SDT06322.1
Glutamine synthetase.
 
     0.879
SDT06354.1
Transcriptional regulator, GntR family.
 
     0.845
SDT06268.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
     0.755
SDT06303.1
Acyl-CoA reductase; Belongs to the aldehyde dehydrogenase family.
  
  0.721
SDS33411.1
Glycosidase.
    
  0.691
SDT24472.1
Alpha-glucosidase; Manually curated.
    
  0.691
glgE
Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.
    
  0.691
nadE
NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.574
SDT06415.1
Alpha/beta hydrolase family protein.
       0.574
SDT06257.1
Putative glutamine amidotransferase.
 
    0.564
Your Current Organism:
Microlunatus soli
NCBI taxonomy Id: 630515
Other names: CCM 7685, DSM 21800, M. soli, Microlunatus soli Kampfer et al. 2010, Microlunatus sp. CC-012602, strain CC-012602, strain CC-12602
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