STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDT47482.1Deferrochelatase/peroxidase EfeB. (428 aa)    
Predicted Functional Partners:
SDT47501.1
Iron uptake system EfeUOB, component EfeO/EfeM.
 
  
 0.996
SDS60975.1
Iron uptake system component EfeO.
 
  
 0.936
SDS60942.1
High-affinity iron transporter.
 
  
 0.894
SDR90222.1
Copper transport protein.
 
  
 0.847
SDS41668.1
Hypothetical protein.
  
    0.622
SDT47516.1
Phospholipase C.
 
     0.608
SDT47470.1
Sulfotransferase domain-containing protein.
       0.568
SDT48112.1
Oxygen-dependent protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
     
  0.499
Your Current Organism:
Microlunatus soli
NCBI taxonomy Id: 630515
Other names: CCM 7685, DSM 21800, M. soli, Microlunatus soli Kampfer et al. 2010, Microlunatus sp. CC-012602, strain CC-012602, strain CC-12602
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.