STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2P5C4S7IQ motif, EF-hand binding site. (423 aa)    
Predicted Functional Partners:
A0A2P5FLX5
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
     0.492
A0A2P5FWE7
IQ motif, EF-hand binding site.
      
 0.489
A0A2P5FJT5
Mediator of RNA polymerase II transcription subunit 13; Component of the Mediator complex, a coactivator involved in regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
  
     0.468
A0A2P5FFZ0
Octamer-binding transcription factor.
  
     0.463
A0A2P5BT01
F-box domain containing protein.
  
     0.440
A0A2P5G1B0
Nucleoporin.
  
     0.428
A0A2P5ADV7
Spatacsin.
  
     0.423
A0A2P5CU12
IQ motif, EF-hand binding site.
      
 0.422
A0A2P5EAW3
IQ motif, EF-hand binding site.
      
 0.422
A0A2P5ED23
Nucleolar 27S pre-rRNA processing, Urb2/Npa2, C-terminal.
  
     0.421
Your Current Organism:
Trema orientale
NCBI taxonomy Id: 63057
Other names: Celtis orientalis, Sponia africana, T. orientale, Trema africana, Trema africanum, Trema orientalis
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