STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2P5D3W8Small auxin-up RNA. (125 aa)    
Predicted Functional Partners:
A0A2P5F0B4
SGNH hydrolase-type esterase domain containing protein.
  
     0.530
A0A2P5F8E1
Cytochrome P.
  
     0.527
A0A2P5E7Y1
Uncharacterized protein.
  
     0.526
A0A2P5EEW7
Uncharacterized protein.
  
     0.524
A0A2P5FEA1
Uncharacterized protein.
  
     0.523
A0A2P5CW10
E3 ubiquitin-protein ligase.
  
     0.521
A0A2P5B4S0
UDP-glucuronosyl/UDP-glucosyltransferase.
  
     0.520
A0A2P5EF43
NAC domain containing protein.
  
     0.520
A0A2P5DBK6
Pentatricopeptide repeat.
  
     0.519
A0A2P5DIF6
Expansin/Lol pI.
  
     0.519
Your Current Organism:
Trema orientale
NCBI taxonomy Id: 63057
Other names: Celtis orientalis, Sponia africana, T. orientale, Trema africana, Trema africanum, Trema orientalis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.