STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2P5D8R0Peptidase S54, rhomboid. (335 aa)    
Predicted Functional Partners:
A0A2P5ECN9
Ribosomal protein.
  
 0.993
A0A2P5ENZ7
Ribosomal protein; Belongs to the universal ribosomal protein uL5 family.
  
 0.992
A0A2P5DWH6
Ribosomal protein.
  
 0.991
A0A2P5FSD2
Ribosomal protein.
  
 0.991
A0A2P5DMF2
Ribosomal protein.
   
 0.990
A0A2P5ESD6
Ribosomal protein L37; Binds to the 23S rRNA.
  
 0.990
A0A2P5FXG7
Ribosomal protein.
  
 0.990
A0A2P5FS29
Ribosomal protein.
   
 0.989
A0A2P5EU01
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.986
A0A2P5FEA3
Ribosomal protein.
   
 0.986
Your Current Organism:
Trema orientale
NCBI taxonomy Id: 63057
Other names: Celtis orientalis, Sponia africana, T. orientale, Trema africana, Trema africanum, Trema orientalis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.