STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2P5DH06Ribosomal protein. (113 aa)    
Predicted Functional Partners:
A0A2P5EW81
50S ribosomal protein.
   
 
 0.947
A0A2P5EWA2
50S ribosomal protein.
   
 
 0.947
A0A2P5FQW3
Ribosomal protein.
   
 
 0.941
A0A2P5FM40
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
    
 
 0.900
A0A2P5F4B8
30S ribosomal protein.
   
 
 0.896
A0A2P5C4K6
Ribosomal protein; Belongs to the universal ribosomal protein uL24 family.
   
 
 0.866
A0A2P5FQP4
Ribosomal protein.
   
 
 0.860
A0A2P5AY31
Splicing factor-like protein.
    
 
 0.857
A0A2P5EDQ1
Ribosomal protein.
    
 
 0.857
A0A2P5F6Q9
Ribosomal protein PSRP-3/Ycf.
    
 
 0.857
Your Current Organism:
Trema orientale
NCBI taxonomy Id: 63057
Other names: Celtis orientalis, Sponia africana, T. orientale, Trema africana, Trema africanum, Trema orientalis
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