STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2P5E7M1Histone deacetylase superfamily. (447 aa)    
Predicted Functional Partners:
A0A2P5F848
ARID DNA-binding domain containing protein.
   
 0.884
A0A2P5ETQ0
ARID DNA-binding domain containing protein.
   
 0.881
A0A2P5F409
ARID DNA-binding domain containing protein.
   
 0.881
A0A2P5AHD5
ARID DNA-binding domain containing protein.
   
 0.879
A0A2P5BFC7
Histone deacetylase.
  
 
 0.806
A0A2P5BFD5
Hist_deacetyl domain-containing protein.
  
 
 0.801
A0A2P5FLX1
Retinoblastoma-related protein.
    
 0.799
A0A2P5ERT2
Uncharacterized protein.
    
 0.789
A0A2P5FXZ4
Putative retinoblastoma binding protein (RIZ).
  
 0.779
A0A2P5D388
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
 0.772
Your Current Organism:
Trema orientale
NCBI taxonomy Id: 63057
Other names: Celtis orientalis, Sponia africana, T. orientale, Trema africana, Trema africanum, Trema orientalis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.