STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2P5EB50High mobility group box domain containing protein. (89 aa)    
Predicted Functional Partners:
A0A2P5FLP2
Actin-related protein; Belongs to the actin family.
    
 0.836
A0A2P5CW24
RuvB-like helicase; Belongs to the RuvB family.
    
 0.775
A0A2P5CJ39
Actin-related protein; Belongs to the actin family.
    
 0.758
A0A2P5FYM5
NIM1-interacting TFIIH subunit.
    
 0.742
A0A2P5DSU2
TFIIH subunit.
    
 0.731
A0A2P5AZ11
DNA helicase INO.
    
  0.705
A0A2P5EWN4
INO80 complex, subunit Ies.
    
 0.692
A0A2P5FEH8
RNA polymerase I associated factor, A49-like.
    
 0.687
A0A2P5E4E9
General transcription factor IIH subunit.
    
 0.678
A0A2P5FE85
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.673
Your Current Organism:
Trema orientale
NCBI taxonomy Id: 63057
Other names: Celtis orientalis, Sponia africana, T. orientale, Trema africana, Trema africanum, Trema orientalis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.