STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2P5EBA4DNA helicase, ATP-dependent. (988 aa)    
Predicted Functional Partners:
A0A2P5DY90
Pre-mRNA splicing factor.
    
 0.984
A0A2P5EUN2
Armadillo-type fold containing protein.
   
 0.984
A0A2P5EU85
mRNA splicing factor SYF.
    
 0.983
A0A2P5G190
mRNA splicing factor Cwf21 domain containing protein.
    
 0.979
A0A2P5E853
Pre-mRNA splicing Prp18-interacting factor.
   
 0.962
A0A2P5FLK6
Pre-mRNA splicing Prp18-interacting factor.
   
 0.962
A0A2P5G0W1
Signal transduction response regulator.
   
 0.961
A0A2P5D2V3
WD repeat containing protein.
   
 0.955
A0A2P5D2X4
Uncharacterized protein.
   
 0.955
A0A2P5FMB5
Pre-mRNA-processing factor.
   
 0.955
Your Current Organism:
Trema orientale
NCBI taxonomy Id: 63057
Other names: Celtis orientalis, Sponia africana, T. orientale, Trema africana, Trema africanum, Trema orientalis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.