STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2P5EIS7Brix domain containing protein. (310 aa)    
Predicted Functional Partners:
A0A2P5AZP2
WD repeat containing protein.
   
   0.999
A0A2P5BBF8
Nucleolar, Nop.
   
 
 0.999
A0A2P5BVZ7
Brix domain containing protein.
   
 
 0.999
A0A2P5EEG5
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 
 0.999
A0A2P5EQ91
Surfeit locus.
   
 
 0.999
A0A2P5F7Y3
DEAD-box ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
   
   0.999
A0A2P5FB56
WD repeat containing protein.
   
    0.999
A0A2P5FDD3
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
   0.999
A0A2P5FT39
Guanine nucleotide-binding protein, beta subunit.
   
   0.999
A0A2P5FH87
Brix domain containing protein.
   
 
 0.998
Your Current Organism:
Trema orientale
NCBI taxonomy Id: 63057
Other names: Celtis orientalis, Sponia africana, T. orientale, Trema africana, Trema africanum, Trema orientalis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.