STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2P5EL84Small GTPase superfamily, Rab type. (75 aa)    
Predicted Functional Partners:
A0A2P5FLS4
TNF receptor-associated factor.
   
 0.875
A0A2P5FLS9
Serine/threonine protein kinase.
   
 0.875
A0A2P5FLU9
Uncharacterized protein.
   
 0.875
A0A2P5EB37
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 0.868
A0A2P5E8Z0
Phosphatidylinositol Kinase; Belongs to the PI3/PI4-kinase family.
    
 0.809
A0A2P5CZG0
Small GTP-binding domain containing protein; Belongs to the small GTPase superfamily. Arf family.
  
 
 0.661
A0A2P5BU03
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
 0.646
A0A2P5AHP7
Zinc finger, LSD1-type.
   
 0.633
A0A2P5AD71
Sec8 exocyst complex component specific domain containing protein.
    
 0.632
A0A2P5BP87
Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.
   
 0.613
Your Current Organism:
Trema orientale
NCBI taxonomy Id: 63057
Other names: Celtis orientalis, Sponia africana, T. orientale, Trema africana, Trema africanum, Trema orientalis
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