STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2P5F002F-box domain containing protein. (397 aa)    
Predicted Functional Partners:
A0A2P5CW93
F-box domain containing protein.
  
   
 0.631
A0A2P5BEF4
F-box domain containing protein.
      
 0.491
A0A2P5F5R9
F-box domain containing protein.
      
0.491
A0A2P5B5W3
Uncharacterized protein.
  
     0.470
A0A2P5EF88
Uncharacterized protein.
  
     0.461
A0A2P5CKU2
Tetratricopeptide-like helical domain containing protein.
  
     0.440
A0A2P5F7C0
Transferase.
  
     0.439
A0A2P5F068
Transferase.
  
     0.436
A0A2P5ELW9
Pentatricopeptide repeat.
      
 0.420
A0A2P5CEA4
RIN4, pathogenic type III effector avirulence factor Avr cleavage site.
  
     0.413
Your Current Organism:
Trema orientale
NCBI taxonomy Id: 63057
Other names: Celtis orientalis, Sponia africana, T. orientale, Trema africana, Trema africanum, Trema orientalis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.